Analysis of interatomic Contacts of Structural Units in PDB entry:
2PN8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PN8 entry

There are 10 chains in PDB entry 2PN8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
TYR 79LYS 269
B
TYR 79LYS 269
C
TYR 79LYS 269
D
TYR 79LYS 269
E
TYR 79LYS 269
F
TYR 79LYS 269
G
TYR 79LYS 269
H
TYR 79ASP 268
I
TYR 79ASP 268
J
TYR 79LYS 269
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 80 helices in PDB entry 2PN8. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
104 107Right-handed 310
Helix 2
2
A
122 134Right-handed alpha
Helix 3
3
A
134 140Right-handed alpha
Helix 4
4
A
152 161Right-handed alpha
Helix 5
5
A
163 167Right-handed 310
Helix 6
6
A
182 188Right-handed alpha
Helix 7
7
A
224 242Right-handed alpha
Helix 8
8
A
262 268Right-handed alpha
Helix 9
9
B
104 107Right-handed 310
Helix 10
10
B
122 134Right-handed alpha
Helix 11
11
B
134 140Right-handed alpha
Helix 12
12
B
152 161Right-handed alpha
Helix 13
13
B
163 167Right-handed 310
Helix 14
14
B
182 188Right-handed alpha
Helix 15
15
B
224 242Right-handed alpha
Helix 16
16
B
263 269Right-handed alpha
Helix 17
17
C
104 107Right-handed 310
Helix 18
18
C
122 134Right-handed alpha
Helix 19
19
C
135 140Right-handed alpha
Helix 20
20
C
152 161Right-handed alpha
Helix 21
21
C
163 167Right-handed 310
Helix 22
22
C
182 188Right-handed alpha
Helix 23
23
C
224 242Right-handed alpha
Helix 24
24
C
262 268Right-handed alpha
Helix 25
25
D
104 107Right-handed 310
Helix 26
26
D
122 134Right-handed alpha
Helix 27
27
D
134 140Right-handed alpha
Helix 28
28
D
152 161Right-handed alpha
Helix 29
29
D
163 167Right-handed 310
Helix 30
30
D
182 188Right-handed alpha
Helix 31
31
D
224 242Right-handed alpha
Helix 32
32
D
262 268Right-handed alpha
Helix 33
33
E
104 107Right-handed 310
Helix 34
34
E
122 134Right-handed alpha
Helix 35
35
E
134 140Right-handed alpha
Helix 36
36
E
152 161Right-handed alpha
Helix 37
37
E
163 167Right-handed 310
Helix 38
38
E
182 188Right-handed alpha
Helix 39
39
E
224 242Right-handed alpha
Helix 40
40
E
263 268Right-handed alpha
Helix 41
41
F
104 107Right-handed 310
Helix 42
42
F
122 134Right-handed alpha
Helix 43
43
F
135 140Right-handed alpha
Helix 44
44
F
152 161Right-handed alpha
Helix 45
45
F
163 167Right-handed 310
Helix 46
46
F
182 188Right-handed alpha
Helix 47
47
F
224 242Right-handed alpha
Helix 48
48
F
263 268Right-handed alpha
Helix 49
49
G
104 107Right-handed 310
Helix 50
50
G
122 134Right-handed alpha
Helix 51
51
G
134 140Right-handed alpha
Helix 52
52
G
152 161Right-handed alpha
Helix 53
53
G
163 167Right-handed 310
Helix 54
54
G
182 188Right-handed alpha
Helix 55
55
G
224 242Right-handed alpha
Helix 56
56
G
262 268Right-handed alpha
Helix 57
57
H
104 107Right-handed 310
Helix 58
58
H
122 134Right-handed alpha
Helix 59
59
H
135 140Right-handed alpha
Helix 60
60
H
152 161Right-handed alpha
Helix 61
61
H
163 167Right-handed 310
Helix 62
62
H
182 188Right-handed alpha
Helix 63
63
H
224 242Right-handed alpha
Helix 64
64
H
263 268Right-handed alpha
Helix 65
65
I
104 107Right-handed 310
Helix 66
66
I
122 134Right-handed alpha
Helix 67
67
I
134 140Right-handed alpha
Helix 68
68
I
152 161Right-handed alpha
Helix 69
69
I
163 167Right-handed 310
Helix 70
70
I
182 188Right-handed alpha
Helix 71
71
I
224 242Right-handed alpha
Helix 72
72
I
262 268Right-handed alpha
Helix 73
73
J
104 107Right-handed 310
Helix 74
74
J
122 134Right-handed alpha
Helix 75
75
J
134 140Right-handed alpha
Helix 76
76
J
152 161Right-handed alpha
Helix 77
77
J
163 167Right-handed 310
Helix 78
78
J
182 188Right-handed alpha
Helix 79
79
J
224 241Right-handed alpha
Helix 80
80
J
263 268Right-handed alpha
Back to top of page

There are 13 sheets in PDB entry 2PN8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 14 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
97 102first strand
Strand 2
A
89 94anti-parallel
Strand 3
A
176 178anti-parallel
Strand 4
A
143 149parallel
Strand 5
A
110 115parallel
Strand 6
A
200 205anti-parallel
Strand 7
A
211 217anti-parallel
Strand 8
B
211 217anti-parallel
Strand 9
B
200 205anti-parallel
Strand 10
B
110 115anti-parallel
Strand 11
B
143 149parallel
Strand 12
B
176 178parallel
Strand 13
B
89 94anti-parallel
Strand 14
B
97 102anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
191 192first strand
Strand 2
B
197 198anti-parallel
Back to list of sheets
Back to top of page

There are 14 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
97 102first strand
Strand 2
C
89 94anti-parallel
Strand 3
C
176 178anti-parallel
Strand 4
C
143 149parallel
Strand 5
C
110 115parallel
Strand 6
C
200 205anti-parallel
Strand 7
C
211 217anti-parallel
Strand 8
D
211 217anti-parallel
Strand 9
D
200 205anti-parallel
Strand 10
D
110 115anti-parallel
Strand 11
D
143 149parallel
Strand 12
D
176 178parallel
Strand 13
D
89 94anti-parallel
Strand 14
D
97 102anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
191 192first strand
Strand 2
C
197 198anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
191 192first strand
Strand 2
D
197 198anti-parallel
Back to list of sheets
Back to top of page

There are 14 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
97 102first strand
Strand 2
E
89 94anti-parallel
Strand 3
E
176 178anti-parallel
Strand 4
E
143 149parallel
Strand 5
E
110 115parallel
Strand 6
E
200 205anti-parallel
Strand 7
E
211 217anti-parallel
Strand 8
F
211 217anti-parallel
Strand 9
F
200 205anti-parallel
Strand 10
F
110 115anti-parallel
Strand 11
F
143 149parallel
Strand 12
F
176 178parallel
Strand 13
F
89 94anti-parallel
Strand 14
F
97 102anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
191 192first strand
Strand 2
E
197 198anti-parallel
Back to list of sheets
Back to top of page

There are 14 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
97 102first strand
Strand 2
G
89 94anti-parallel
Strand 3
G
176 178anti-parallel
Strand 4
G
143 149parallel
Strand 5
G
110 115parallel
Strand 6
G
200 205anti-parallel
Strand 7
G
211 217anti-parallel
Strand 8
H
211 217anti-parallel
Strand 9
H
200 205anti-parallel
Strand 10
H
110 115anti-parallel
Strand 11
H
143 149parallel
Strand 12
H
176 178parallel
Strand 13
H
89 94anti-parallel
Strand 14
H
97 102anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
191 192first strand
Strand 2
G
197 198anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
191 192first strand
Strand 2
H
197 198anti-parallel
Back to list of sheets
Back to top of page

There are 14 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
97 102first strand
Strand 2
I
89 94anti-parallel
Strand 3
I
176 178anti-parallel
Strand 4
I
143 149parallel
Strand 5
I
110 115parallel
Strand 6
I
200 205anti-parallel
Strand 7
I
211 217anti-parallel
Strand 8
J
211 217anti-parallel
Strand 9
J
200 205anti-parallel
Strand 10
J
110 115anti-parallel
Strand 11
J
143 149parallel
Strand 12
J
176 178parallel
Strand 13
J
89 94anti-parallel
Strand 14
J
97 102anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
191 192first strand
Strand 2
I
197 198anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
191 192first strand
Strand 2
J
197 198anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il