Analysis of interatomic Contacts of Structural Units in PDB entry:
2PYL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PYL entry

There are 3 chains in PDB entry 2PYL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 G 1 C 10
Y
 A 4 C 17
A
 PRO 5LYS 575
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2PYL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
43 55Right-handed alpha
Helix 2
2
A
62 77Right-handed alpha
Helix 3
3
A
123 125Right-handed 310
Helix 4
4
A
129 138Right-handed alpha
Helix 5
5
A
159 182Right-handed alpha
Helix 6
6
A
189 203Right-handed alpha
Helix 7
7
A
203 211Right-handed alpha
Helix 8
8
A
215 224Right-handed alpha
Helix 9
9
A
235 238Right-handed 310
Helix 10
10
A
252 261Right-handed alpha
Helix 11
11
A
330 339Right-handed alpha
Helix 12
12
A
360 373Right-handed alpha
Helix 13
13
A
375 394Right-handed alpha
Helix 14
14
A
426 448Right-handed alpha
Helix 15
15
A
471 475Right-handed 310
Helix 16
16
A
534 539Right-handed alpha
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There are 6 sheets in PDB entry 2PYL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 41first strand
Strand 2
A
24 31anti-parallel
Strand 3
A
8 15anti-parallel
Strand 4
A
57 60parallel
Strand 5
A
114 121parallel
Strand 6
A
100 109anti-parallel
Strand 7
A
89 94anti-parallel
Strand 8
A
80 81parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 233first strand
Strand 2
A
452 456anti-parallel
Strand 3
A
459 463anti-parallel
Strand 4
A
245 250anti-parallel
Strand 5
A
483 496anti-parallel
Strand 6
A
499 508anti-parallel
Strand 7
A
513 515anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 242first strand
Strand 2
A
483 496anti-parallel
Strand 3
A
499 508anti-parallel
Strand 4
A
523 530anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 272first strand
Strand 2
A
340 356anti-parallel
Strand 3
A
283 294anti-parallel
Strand 4
A
324 329anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 406first strand
Strand 2
A
412 416anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
551 561first strand
Strand 2
A
564 573anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il