Analysis of interatomic Contacts of Structural Units in PDB entry:
2PYO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PYO entry

There are 10 chains in PDB entry 2PYO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
I
 A -73 T 73
J
 A -73 T 73
A
 LYS 37ALA 135
B
 ARG 23GLY 102
C
 ALA 13GLU 120
D
 ARG 28LYS 122
E
 LYS 37ALA 135
F
 ALA 15GLY 102
G
 GLY 11THR 119
H
 ARG 28LYS 122
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 36 helices in PDB entry 2PYO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
44 57Right-handed alpha
Helix 2
2
A
63 77Right-handed alpha
Helix 3
3
A
85 114Right-handed alpha
Helix 4
4
A
120 131Right-handed alpha
Helix 5
5
B
25 29Right-handed 310
Helix 6
6
B
30 41Right-handed alpha
Helix 7
7
B
49 76Right-handed alpha
Helix 8
8
B
82 93Right-handed alpha
Helix 9
9
C
15 21Right-handed alpha
Helix 10
10
C
25 36Right-handed alpha
Helix 11
11
C
44 72Right-handed alpha
Helix 12
12
C
78 89Right-handed alpha
Helix 13
13
C
89 96Right-handed alpha
Helix 14
14
C
111 115Right-handed 310
Helix 15
15
D
34 46Right-handed alpha
Helix 16
16
D
52 81Right-handed alpha
Helix 17
17
D
87 99Right-handed alpha
Helix 18
18
D
100 120Right-handed alpha
Helix 19
19
E
44 57Right-handed alpha
Helix 20
20
E
63 77Right-handed alpha
Helix 21
21
E
85 114Right-handed alpha
Helix 22
22
E
120 131Right-handed alpha
Helix 23
23
F
24 29Right-handed 310
Helix 24
24
F
30 41Right-handed alpha
Helix 25
25
F
49 76Right-handed alpha
Helix 26
26
F
82 92Right-handed alpha
Helix 27
27
G
15 21Right-handed alpha
Helix 28
28
G
25 35Right-handed alpha
Helix 29
29
G
44 71Right-handed alpha
Helix 30
30
G
78 89Right-handed alpha
Helix 31
31
G
89 96Right-handed alpha
Helix 32
32
G
111 115Right-handed 310
Helix 33
33
H
34 46Right-handed alpha
Helix 34
34
H
52 81Right-handed alpha
Helix 35
35
H
87 99Right-handed alpha
Helix 36
36
H
100 120Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 2PYO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 84first strand
Strand 2
B
80 81parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 119first strand
Strand 2
B
45 46parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 98first strand
Strand 2
G
100 101parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
41 42first strand
Strand 2
D
85 86parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
76 77first strand
Strand 2
D
50 51parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
100 101first strand
Strand 2
F
97 98parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
83 84first strand
Strand 2
F
80 81parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
118 119first strand
Strand 2
F
45 46parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
41 42first strand
Strand 2
H
85 86parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
76 77first strand
Strand 2
H
50 51parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il