Analysis of interatomic Contacts of Structural Units in PDB entry:
2Q8F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Q8F entry

There is 1 chain in PDB entry 2Q8F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 41PRO 423
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 2Q8F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
41 51Right-handed alpha
Helix 2
2
A
58 67Right-handed alpha
Helix 3
3
A
71 95Right-handed alpha
Helix 4
4
A
98 103Right-handed alpha
Helix 5
5
A
104 122Right-handed alpha
Helix 6
6
A
123 125Right-handed 310
Helix 7
7
A
131 149Right-handed alpha
Helix 8
8
A
151 167Right-handed alpha
Helix 9
9
A
171 203Right-handed alpha
Helix 10
10
A
225 245Right-handed alpha
Helix 11
11
A
269 292Right-handed alpha
Helix 12
12
A
324 329Right-handed alpha
Helix 13
13
A
330 333Right-handed 310
Helix 14
14
A
357 369Right-handed alpha
Helix 15
15
A
404 412Right-handed alpha
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There are 2 sheets in PDB entry 2Q8F. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 224first strand
Strand 2
A
265 268anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 256first strand
Strand 2
A
301 307parallel
Strand 3
A
311 318anti-parallel
Strand 4
A
382 390anti-parallel
Strand 5
A
372 378anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il