Analysis of interatomic Contacts of Structural Units in PDB entry:
2QME


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QME entry

There are 2 chains in PDB entry 2QME (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 178
I
 GLU 10THR 33
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 2QME. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 26Right-handed alpha
Helix 2
2
A
61 65Right-handed 310
Helix 3
3
A
67 72Right-handed 310
Helix 4
4
A
86 96Right-handed alpha
Helix 5
5
A
96 105Right-handed alpha
Helix 6
6
A
116 120Right-handed 310
Helix 7
7
A
122 131Right-handed alpha
Helix 8
8
A
138 149Right-handed alpha
Helix 9
9
A
164 178Right-handed alpha
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There is 1 sheet ( A) in PDB entry 2QME.

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 156first strand
Strand 2
A
110 115parallel
Strand 3
A
77 83parallel
Strand 4
A
2 10parallel
Strand 5
A
49 58parallel
Strand 6
A
37 46anti-parallel
Strand 7
I
15 23anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il