Analysis of interatomic Contacts of Structural Units in PDB entry:
2QYK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QYK entry

There are 2 chains in PDB entry 2QYK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 289ILE 622
B
HIS 288ILE 622
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 44 helices in PDB entry 2QYK. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
300 308Right-handed alpha
Helix 2
2
A
309 311Right-handed 310
Helix 3
3
A
317 325Right-handed alpha
Helix 4
4
A
328 341Right-handed alpha
Helix 5
5
A
342 347Right-handed alpha
Helix 6
6
A
350 364Right-handed alpha
Helix 7
7
A
373 389Right-handed alpha
Helix 8
8
A
390 394Right-handed 310
Helix 9
9
A
398 412Right-handed alpha
Helix 10
10
A
420 427Right-handed alpha
Helix 11
11
A
429 435Right-handed alpha
Helix 12
12
A
439 452Right-handed alpha
Helix 13
13
A
453 455Right-handed 310
Helix 14
14
A
465 482Right-handed alpha
Helix 15
15
A
483 486Right-handed 310
Helix 16
16
A
487 501Right-handed alpha
Helix 17
17
A
514 531Right-handed alpha
Helix 18
18
A
532 536Right-handed 310
Helix 19
19
A
537 562Right-handed alpha
Helix 20
20
A
576 588Right-handed alpha
Helix 21
21
A
588 600Right-handed alpha
Helix 22
22
A
604 622Right-handed alpha
Helix 23
23
B
300 308Right-handed alpha
Helix 24
24
B
309 311Right-handed 310
Helix 25
25
B
317 325Right-handed alpha
Helix 26
26
B
328 341Right-handed alpha
Helix 27
27
B
342 347Right-handed alpha
Helix 28
28
B
350 364Right-handed alpha
Helix 29
29
B
373 389Right-handed alpha
Helix 30
30
B
390 394Right-handed 310
Helix 31
31
B
398 412Right-handed alpha
Helix 32
32
B
420 427Right-handed alpha
Helix 33
33
B
429 435Right-handed alpha
Helix 34
34
B
439 452Right-handed alpha
Helix 35
35
B
453 455Right-handed 310
Helix 36
36
B
465 482Right-handed alpha
Helix 37
37
B
483 486Right-handed 310
Helix 38
38
B
487 501Right-handed alpha
Helix 39
39
B
514 531Right-handed alpha
Helix 40
40
B
532 536Right-handed 310
Helix 41
41
B
537 563Right-handed alpha
Helix 42
42
B
576 588Right-handed alpha
Helix 43
43
B
588 601Right-handed alpha
Helix 44
44
B
604 621Right-handed alpha
Back to top of page
There are no sheets in PDB entry 2QYK

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il