Analysis of interatomic Contacts of Structural Units in PDB entry:
2R8J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2R8J entry

There are 6 chains in PDB entry 2R8J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY -1ILE 509
Q
G 5 G 13
U
G 4 C 14
B
MET 1ILE 509
P
G 5 G 13
T
G 4 C 14
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 2R8J. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
5 11Right-handed alpha
Helix 2
2
A
12 14Right-handed 310
Helix 3
3
A
33 43Right-handed alpha
Helix 4
4
A
65 70Right-handed 310
Helix 5
5
A
76 82Right-handed alpha
Helix 6
6
A
120 122Right-handed 310
Helix 7
7
A
128 146Right-handed alpha
Helix 8
8
A
161 172Right-handed alpha
Helix 9
9
A
182 187Right-handed alpha
Helix 10
10
A
187 197Right-handed alpha
Helix 11
11
A
209 215Right-handed 310
Helix 12
12
A
232 256Right-handed alpha
Helix 13
13
A
267 278Right-handed alpha
Helix 14
14
A
287 289Right-handed 310
Helix 15
15
A
290 296Right-handed alpha
Helix 16
16
A
301 305Right-handed 310
Helix 17
17
A
310 321Right-handed alpha
Helix 18
18
A
326 334Right-handed alpha
Helix 19
19
A
338 350Right-handed alpha
Helix 20
20
A
363 365Right-handed 310
Helix 21
21
A
366 378Right-handed alpha
Helix 22
22
A
408 435Right-handed alpha
Helix 23
23
A
471 488Right-handed alpha
Helix 24
24
B
5 12Right-handed alpha
Helix 25
25
B
33 43Right-handed alpha
Helix 26
26
B
63 68Right-handed alpha
Helix 27
27
B
76 84Right-handed alpha
Helix 28
28
B
120 122Right-handed 310
Helix 29
29
B
128 146Right-handed alpha
Helix 30
30
B
161 172Right-handed alpha
Helix 31
31
B
182 187Right-handed alpha
Helix 32
32
B
187 197Right-handed alpha
Helix 33
33
B
209 215Right-handed 310
Helix 34
34
B
232 256Right-handed alpha
Helix 35
35
B
267 277Right-handed alpha
Helix 36
36
B
287 289Right-handed 310
Helix 37
37
B
290 296Right-handed alpha
Helix 38
38
B
301 305Right-handed 310
Helix 39
39
B
310 320Right-handed alpha
Helix 40
40
B
326 335Right-handed alpha
Helix 41
41
B
338 351Right-handed alpha
Helix 42
42
B
356 360Right-handed 310
Helix 43
43
B
366 379Right-handed alpha
Helix 44
44
B
408 434Right-handed alpha
Helix 45
45
B
470 488Right-handed alpha
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There are 8 sheets in PDB entry 2R8J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
149 153first strand
Strand 2
A
156 160anti-parallel
Strand 3
A
26 31anti-parallel
Strand 4
A
260 265anti-parallel
Strand 5
A
283 285parallel
Strand 6
A
220 221parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
58 62first strand
Strand 2
A
51 55anti-parallel
Strand 3
A
88 91parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
102 103first strand
Strand 2
A
94 96anti-parallel
Strand 3
A
124 126anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
395 399first strand
Strand 2
A
498 506anti-parallel
Strand 3
A
440 448anti-parallel
Strand 4
A
454 460anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
149 151first strand
Strand 2
B
156 160anti-parallel
Strand 3
B
26 31anti-parallel
Strand 4
B
260 265anti-parallel
Strand 5
B
283 285parallel
Strand 6
B
220 221parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
58 62first strand
Strand 2
B
51 55anti-parallel
Strand 3
B
88 91parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
94 96first strand
Strand 2
B
124 126anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
394 400first strand
Strand 2
B
498 509anti-parallel
Strand 3
B
437 448anti-parallel
Strand 4
B
454 457anti-parallel
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