Analysis of interatomic Contacts of Structural Units in PDB entry:
2RDD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2RDD entry

There are 2 chains in PDB entry 2RDD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 1036
B
 SER 19SER 55
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 51 helices in PDB entry 2RDD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 6Right-handed alpha
Helix 2
2
A
8 30Right-handed alpha
Helix 3
3
A
55 61Right-handed alpha
Helix 4
4
A
61 67Right-handed alpha
Helix 5
5
A
101 113Right-handed alpha
Helix 6
6
A
114 118Right-handed 310
Helix 7
7
A
119 126Right-handed alpha
Helix 8
8
A
152 161Right-handed alpha
Helix 9
9
A
162 169Right-handed 310
Helix 10
10
A
189 196Right-handed alpha
Helix 11
11
A
199 211Right-handed alpha
Helix 12
12
A
242 248Right-handed alpha
Helix 13
13
A
261 266Right-handed alpha
Helix 14
14
A
298 310Right-handed alpha
Helix 15
15
A
311 314Right-handed 310
Helix 16
16
A
330 360Right-handed alpha
Helix 17
17
A
361 364Right-handed 310
Helix 18
18
A
365 372Right-handed alpha
Helix 19
19
A
372 385Right-handed alpha
Helix 20
20
A
391 414Right-handed alpha
Helix 21
21
A
414 423Right-handed alpha
Helix 22
22
A
426 435Right-handed alpha
Helix 23
23
A
437 450Right-handed alpha
Helix 24
24
A
453 458Right-handed alpha
Helix 25
25
A
463 488Right-handed alpha
Helix 26
26
A
488 496Right-handed alpha
Helix 27
27
A
515 537Right-handed alpha
Helix 28
28
A
538 558Right-handed alpha
Helix 29
29
A
583 602Right-handed alpha
Helix 30
30
A
633 637Right-handed 310
Helix 31
31
A
639 642Right-handed 310
Helix 32
32
A
643 656Right-handed alpha
Helix 33
33
A
691 707Right-handed alpha
Helix 34
34
A
732 740Right-handed alpha
Helix 35
35
A
742 756Right-handed alpha
Helix 36
36
A
777 780Right-handed 310
Helix 37
37
A
782 787Right-handed 310
Helix 38
38
A
802 804Right-handed 310
Helix 39
39
A
839 848Right-handed alpha
Helix 40
40
A
849 851Right-handed 310
Helix 41
41
A
872 884Right-handed alpha
Helix 42
42
A
884 889Right-handed alpha
Helix 43
43
A
898 919Right-handed alpha
Helix 44
44
A
924 956Right-handed alpha
Helix 45
45
A
959 971Right-handed alpha
Helix 46
46
A
971 983Right-handed alpha
Helix 47
47
A
986 992Right-handed alpha
Helix 48
48
A
997 1014Right-handed alpha
Helix 49
49
A
1015 1031Right-handed alpha
Helix 50
50
B
21 50Right-handed alpha
Helix 51
51
B
51 55Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 2RDD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 47first strand
Strand 2
A
88 94anti-parallel
Strand 3
A
75 79anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 328first strand
Strand 2
A
138 143anti-parallel
Strand 3
A
284 288anti-parallel
Strand 4
A
278 281anti-parallel
Strand 5
A
606 613anti-parallel
Strand 6
A
624 631anti-parallel
Strand 7
A
572 577anti-parallel
Strand 8
A
662 667anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 271first strand
Strand 2
A
183 188anti-parallel
Strand 3
A
768 775parallel
Strand 4
A
757 763anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 219first strand
Strand 2
A
232 233anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 253first strand
Strand 2
A
259 260anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
818 819first strand
Strand 2
A
822 828anti-parallel
Strand 3
A
681 686anti-parallel
Strand 4
A
855 859anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
725 727first strand
Strand 2
A
809 811anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
790 792first strand
Strand 2
A
798 800anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il