Analysis of interatomic Contacts of Structural Units in PDB entry:
2RKX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2RKX entry

There is 1 chain in PDB entry 2RKX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 250
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 2RKX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
31 42Right-handed alpha
Helix 2
2
A
57 73Right-handed alpha
Helix 3
3
A
85 95Right-handed alpha
Helix 4
4
A
103 109Right-handed alpha
Helix 5
5
A
110 121Right-handed alpha
Helix 6
6
A
153 163Right-handed alpha
Helix 7
7
A
183 191Right-handed alpha
Helix 8
8
A
192 194Right-handed 310
Helix 9
9
A
206 216Right-handed alpha
Helix 10
10
A
224 229Right-handed alpha
Helix 11
11
A
233 244Right-handed alpha
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There are 2 sheets in PDB entry 2RKX. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 17first strand
Strand 2
A
5 13anti-parallel
Strand 3
A
46 51parallel
Strand 4
A
77 80parallel
Strand 5
A
99 102parallel
Strand 6
A
125 134parallel
Strand 7
A
137 142anti-parallel
Strand 8
A
147 152anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 17first strand
Strand 2
A
5 13anti-parallel
Strand 3
A
220 223parallel
Strand 4
A
198 201parallel
Strand 5
A
167 172parallel
Strand 6
A
125 134parallel
Strand 7
A
137 142anti-parallel
Strand 8
A
147 152anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il