Analysis of interatomic Contacts of Structural Units in PDB entry:
2UU9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2UU9 entry

There are 25 chains in PDB entry 2UU9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	U 5	U 1544
B	VAL 7	GLU 241
C	GLY 2	ILE 208
D	GLY 2	ARG 209
E	ASP 5	GLU 155
F	MET 1	ALA 101
G	ALA 2	TRP 156
H	MET 1	TRP 138
I	GLU 2	ARG 128
J	LYS 3	VAL 101
K	LYS 11	SER 129
L	PRO 5	ALA 129
M	ALA 2	LYS 126
N	ALA 2	TRP 61
O	PRO 2	GLY 89
P	MET 1	ALA 84
Q	PRO 2	ALA 105
R	PRO 16	LYS 88
S	PRO 2	GLY 82
T	ARG 8	ALA 106
U	GLY 2	LYS 26
X	G 1	A 5
Y	U 29	U 33
Y	A 35	C 36
Y	A 38	A 41

There are 88 helices in PDB entry 2UU9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	25	30	Right-handed 310
Helix 2	AA2	B	43	64	Right-handed alpha
Helix 3	AA3	B	77	87	Right-handed alpha
Helix 4	AA4	B	104	121	Right-handed alpha
Helix 5	AA5	B	131	136	Right-handed alpha
Helix 6	AA6	B	136	150	Right-handed alpha
Helix 7	AA7	B	170	180	Right-handed alpha
Helix 8	AA8	B	193	197	Right-handed 310
Helix 9	AA9	B	207	224	Right-handed alpha
Helix 10	AB1	C	28	46	Right-handed alpha
Helix 11	AB2	C	73	78	Right-handed alpha
Helix 12	AB3	C	82	95	Right-handed alpha
Helix 13	AB4	C	112	126	Right-handed alpha
Helix 14	AB5	C	129	144	Right-handed alpha
Helix 15	AB6	C	156	160	Right-handed 310
Helix 16	AB7	D	8	15	Right-handed alpha
Helix 17	AB8	D	52	69	Right-handed alpha
Helix 18	AB9	D	71	85	Right-handed alpha
Helix 19	AC1	D	90	99	Right-handed alpha
Helix 20	AC2	D	100	108	Right-handed alpha
Helix 21	AC3	D	113	123	Right-handed alpha
Helix 22	AC4	D	150	153	Right-handed 310
Helix 23	AC5	D	155	165	Right-handed alpha
Helix 24	AC6	D	190	194	Right-handed 310
Helix 25	AC7	D	199	209	Right-handed alpha
Helix 26	AC8	E	50	64	Right-handed alpha
Helix 27	AC9	E	104	113	Right-handed alpha
Helix 28	AD1	E	127	141	Right-handed alpha
Helix 29	AD2	E	144	152	Right-handed alpha
Helix 30	AD3	F	15	34	Right-handed alpha
Helix 31	AD4	F	68	70	Right-handed 310
Helix 32	AD5	F	71	80	Right-handed alpha
Helix 33	AD6	G	20	31	Right-handed alpha
Helix 34	AD7	G	35	54	Right-handed alpha
Helix 35	AD8	G	57	70	Right-handed alpha
Helix 36	AD9	G	92	109	Right-handed alpha
Helix 37	AE1	G	115	130	Right-handed alpha
Helix 38	AE2	G	132	148	Right-handed alpha
Helix 39	AE3	G	151	155	Right-handed 310
Helix 40	AE4	H	4	19	Right-handed alpha
Helix 41	AE5	H	29	42	Right-handed alpha
Helix 42	AE6	H	52	56	Right-handed 310
Helix 43	AE7	H	96	100	Right-handed 310
Helix 44	AE8	H	102	107	Right-handed 310
Helix 45	AE9	H	121	127	Right-handed alpha
Helix 46	AF1	I	32	37	Right-handed alpha
Helix 47	AF2	I	42	46	Right-handed 310
Helix 48	AF3	I	47	53	Right-handed alpha
Helix 49	AF4	I	69	88	Right-handed alpha
Helix 50	AF5	I	89	91	Right-handed 310
Helix 51	AF6	I	92	97	Right-handed alpha
Helix 52	AF7	J	12	17	Right-handed alpha
Helix 53	AF8	J	17	22	Right-handed alpha
Helix 54	AF9	J	24	29	Right-handed alpha
Helix 55	AG1	K	52	56	Right-handed 310
Helix 56	AG2	K	57	74	Right-handed alpha
Helix 57	AG3	K	91	101	Right-handed alpha
Helix 58	AG4	K	122	126	Right-handed 310
Helix 59	AG5	L	6	14	Right-handed alpha
Helix 60	AG6	M	14	21	Right-handed alpha
Helix 61	AG7	M	26	36	Right-handed alpha
Helix 62	AG8	M	44	48	Right-handed 310
Helix 63	AG9	M	49	64	Right-handed alpha
Helix 64	AH1	M	66	84	Right-handed alpha
Helix 65	AH2	M	86	95	Right-handed alpha
Helix 66	AH3	M	107	112	Right-handed alpha
Helix 67	AH4	N	3	10	Right-handed 310
Helix 68	AH5	N	40	51	Right-handed alpha
Helix 69	AH6	O	4	16	Right-handed alpha
Helix 70	AH7	O	24	46	Right-handed alpha
Helix 71	AH8	O	49	74	Right-handed alpha
Helix 72	AH9	O	74	86	Right-handed alpha
Helix 73	AI1	P	52	63	Right-handed alpha
Helix 74	AI2	P	67	77	Right-handed alpha
Helix 75	AI3	Q	81	96	Right-handed alpha
Helix 76	AI4	R	36	41	Right-handed alpha
Helix 77	AI5	R	42	44	Right-handed 310
Helix 78	AI6	R	52	57	Right-handed alpha
Helix 79	AI7	R	59	77	Right-handed alpha
Helix 80	AI8	S	12	25	Right-handed alpha
Helix 81	AI9	S	41	45	Right-handed 310
Helix 82	AJ1	S	63	67	Right-handed 310
Helix 83	AJ2	S	70	75	Right-handed 310
Helix 84	AJ3	T	10	12	Right-handed 310
Helix 85	AJ4	T	13	45	Right-handed alpha
Helix 86	AJ5	T	48	67	Right-handed alpha
Helix 87	AJ6	T	74	94	Right-handed alpha
Helix 88	AJ7	U	8	16	Right-handed alpha

There are 24 sheets in PDB entry 2UU9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	36	first strand
Strand 2	B	39	42	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	93	first strand
Strand 2	B	68	71	parallel
Strand 3	B	161	164	parallel
Strand 4	B	184	188	parallel
Strand 5	B	199	202	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	59	first strand
Strand 2	C	64	65	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	167	171	first strand
Strand 2	C	148	152	anti-parallel
Strand 3	C	195	203	anti-parallel
Strand 4	C	182	190	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	132	first strand
Strand 2	D	126	128	anti-parallel
Strand 3	D	145	148	anti-parallel
Strand 4	D	182	185	anti-parallel
Strand 5	D	174	177	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	7	20	first strand
Strand 2	E	23	35	anti-parallel
Strand 3	E	40	48	anti-parallel
Strand 4	E	66	68	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	80	84	first strand
Strand 2	E	87	93	anti-parallel
Strand 3	E	118	124	anti-parallel
Strand 4	E	100	101	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	44	52	first strand
Strand 2	F	55	60	anti-parallel
Strand 3	F	2	10	anti-parallel
Strand 4	F	66	67	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	44	52	first strand
Strand 2	F	55	60	anti-parallel
Strand 3	F	2	10	anti-parallel
Strand 4	F	85	92	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	73	75	first strand
Strand 2	G	88	90	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	78	79	first strand
Strand 2	G	84	85	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	45	51	first strand
Strand 2	H	58	63	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	82	85	first strand
Strand 2	H	131	138	anti-parallel
Strand 3	H	94	95	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	82	85	first strand
Strand 2	H	131	138	anti-parallel
Strand 3	H	109	114	anti-parallel
Strand 4	H	117	120	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	6	first strand
Strand 2	I	14	21	anti-parallel
Strand 3	I	59	66	anti-parallel
Strand 4	I	26	28	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	37	43	first strand
Strand 2	J	67	74	anti-parallel
Strand 3	J	4	10	anti-parallel
Strand 4	J	94	96	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	46	48	first strand
Strand 2	J	62	64	anti-parallel
Strand 3	N	57	58	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	39	44	first strand
Strand 2	K	29	33	anti-parallel
Strand 3	K	17	22	anti-parallel
Strand 4	K	79	85	parallel
Strand 5	K	104	107	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	109	110	first strand
Strand 2	R	85	86	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	42	43	first strand
Strand 2	L	53	60	anti-parallel
Strand 3	L	65	69	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	42	43	first strand
Strand 2	L	53	60	anti-parallel
Strand 3	L	33	39	anti-parallel
Strand 4	L	82	85	anti-parallel
Strand 5	L	100	101	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	49	51	first strand
Strand 2	P	35	39	anti-parallel
Strand 3	P	17	23	anti-parallel
Strand 4	P	2	8	anti-parallel
Strand 5	P	65	66	parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	5	15	first strand
Strand 2	Q	18	29	anti-parallel
Strand 3	Q	33	45	anti-parallel
Strand 4	Q	69	78	parallel
Strand 5	Q	56	66	anti-parallel
Strand 6	Q	5	15	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	32	33	first strand
Strand 2	S	50	52	parallel
Strand 3	S	57	58	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2UU9

Analysis of interatomic Contacts of Structural Units in PDB entry:
2UU9