Analysis of interatomic Contacts of Structural Units in PDB entry:
2UUY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2UUY entry

There are 2 chains in PDB entry 2UUY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ILE 21ASN 243
B
CYS 24ALA 75
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 2UUY. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
58 62Right-handed 310
Helix 2
2
A
164 172Right-handed alpha
Helix 3
3
A
232 243Right-handed alpha
Helix 4
4
B
65 71Right-handed alpha
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There are 3 sheets in PDB entry 2UUY. Click on sheet of interest to get list of strands forming it: AA, AB, BA,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
25 26first strand
Strand 2
A
156 161anti-parallel
Strand 3
A
135 140anti-parallel
Strand 4
A
200 203anti-parallel
Strand 5
A
206 213anti-parallel
Strand 6
A
224 228anti-parallel
Strand 7
A
180 183anti-parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
35 39first strand
Strand 2
A
43 51anti-parallel
Strand 3
A
54 57anti-parallel
Strand 4
A
106 110anti-parallel
Strand 5
A
83 92anti-parallel
Strand 6
A
67 70anti-parallel
Strand 7
A
35 39anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
42 48first strand
Strand 2
B
51 57anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il