Analysis of interatomic Contacts of Structural Units in PDB entry:
2UVL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2UVL entry

There are 2 chains in PDB entry 2UVL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 242GLN 335
B
SER 242ALA 336
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 2UVL. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
249 253Right-handed 310
Helix 2
2
A
254 261Right-handed alpha
Helix 3
3
A
262 265Right-handed 310
Helix 4
4
A
272 279Right-handed alpha
Helix 5
5
A
307 316Right-handed alpha
Helix 6
6
A
319 335Right-handed alpha
Helix 7
7
B
248 253Right-handed 310
Helix 8
8
B
254 261Right-handed alpha
Helix 9
9
B
262 265Right-handed 310
Helix 10
10
B
272 279Right-handed alpha
Helix 11
11
B
307 316Right-handed alpha
Helix 12
12
B
319 336Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 2UVL. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
243 244first strand
Strand 2
B
298 300anti-parallel
Strand 3
B
290 292anti-parallel
Strand 4
B
281 283anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
281 285first strand
Strand 2
A
289 292anti-parallel
Strand 3
A
298 300anti-parallel
Strand 4
B
243 244anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il