Analysis of interatomic Contacts of Structural Units in PDB entry:
2V1U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2V1U entry

There are 3 chains in PDB entry 2V1U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 13LEU 399
B
 T 1 T 22
C
 A 1 A 22
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 2V1U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 25Right-handed alpha
Helix 2
2
A
36 46Right-handed alpha
Helix 3
3
A
47 51Right-handed 310
Helix 4
4
A
68 88Right-handed alpha
Helix 5
5
A
103 116Right-handed alpha
Helix 6
6
A
125 138Right-handed alpha
Helix 7
7
A
152 157Right-handed alpha
Helix 8
8
A
159 170Right-handed alpha
Helix 9
9
A
171 173Right-handed 310
Helix 10
10
A
196 201Right-handed alpha
Helix 11
11
A
214 230Right-handed alpha
Helix 12
12
A
238 249Right-handed alpha
Helix 13
13
A
253 271Right-handed alpha
Helix 14
14
A
277 299Right-handed alpha
Helix 15
15
A
301 315Right-handed alpha
Helix 16
16
A
323 337Right-handed alpha
Helix 17
17
A
343 357Right-handed alpha
Helix 18
18
A
368 370Right-handed 310
Helix 19
19
A
381 392Right-handed alpha
Helix 20
20
A
394 399Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 2V1U. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 97first strand
Strand 2
A
143 149parallel
Strand 3
A
181 185parallel
Strand 4
A
59 61parallel
Strand 5
A
206 207parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 322first strand
Strand 2
A
372 378anti-parallel
Strand 3
A
360 366anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il