Analysis of interatomic Contacts of Structural Units in PDB entry:
2V5E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2V5E entry

There are 2 chains in PDB entry 2V5E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 150SER 349
B
 GLN 34ILE 134
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 2V5E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
152 163Right-handed alpha
Helix 2
2
A
164 180Right-handed alpha
Helix 3
3
A
188 203Right-handed alpha
Helix 4
4
A
204 214Right-handed alpha
Helix 5
5
A
218 227Right-handed alpha
Helix 6
6
A
230 235Right-handed alpha
Helix 7
7
A
242 252Right-handed alpha
Helix 8
8
A
253 267Right-handed alpha
Helix 9
9
A
281 292Right-handed alpha
Helix 10
10
A
318 320Right-handed 310
Helix 11
11
A
321 334Right-handed alpha
Helix 12
12
A
335 348Right-handed alpha
Helix 13
13
B
51 54Right-handed 310
Helix 14
14
B
77 89Right-handed alpha
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There are 4 sheets in PDB entry 2V5E. Click on sheet of interest to get list of strands forming it: AA, BA, BB, BC,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 301first strand
Strand 2
A
309 311anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 49first strand
Strand 2
B
62 69anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 107first strand
Strand 2
B
128 134anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 114first strand
Strand 2
B
120 123anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il