Analysis of interatomic Contacts of Structural Units in PDB entry:
2V5P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2V5P entry

There are 4 chains in PDB entry 2V5P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
CYS 1516LYS 1990
B
CYS 1516LYS 1990
C
GLU 6PRO 63
D
GLU 6PRO 63
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 2V5P. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
1530 1533Right-handed 310
Helix 2
2
A
1643 1646Right-handed 310
Helix 3
3
A
1664 1666Right-handed 310
Helix 4
4
A
1792 1795Right-handed 310
Helix 5
5
A
1819 1822Right-handed 310
Helix 6
6
A
1932 1937Right-handed alpha
Helix 7
7
A
1985 1987Right-handed 310
Helix 8
8
B
1530 1533Right-handed 310
Helix 9
9
B
1643 1646Right-handed 310
Helix 10
10
B
1664 1666Right-handed 310
Helix 11
11
B
1792 1795Right-handed 310
Helix 12
12
B
1819 1822Right-handed 310
Helix 13
13
B
1932 1937Right-handed alpha
Helix 14
14
B
1985 1987Right-handed 310
Helix 15
15
C
10 21Right-handed alpha
Helix 16
16
C
41 47Right-handed alpha
Helix 17
17
C
52 58Right-handed alpha
Helix 18
18
D
10 21Right-handed alpha
Helix 19
19
D
41 47Right-handed alpha
Helix 20
20
D
53 58Right-handed alpha
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There are 24 sheets in PDB entry 2V5P. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, CA, A,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1517 1519first strand
Strand 2
A
1526 1528anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1538 1542first strand
Strand 2
A
1546 1550anti-parallel
Strand 3
A
1563 1567anti-parallel
Strand 4
A
1572 1576anti-parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1581 1584first strand
Strand 2
A
1587 1592anti-parallel
Strand 3
A
1607 1614anti-parallel
Strand 4
A
1635 1642parallel
Strand 5
A
1624 1630anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1653 1656first strand
Strand 2
A
1659 1662anti-parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1673 1675first strand
Strand 2
A
1690 1692anti-parallel
Strand 3
A
1712 1714anti-parallel
Strand 4
A
1722 1725anti-parallel
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There are 5 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1732 1734first strand
Strand 2
A
1739 1744anti-parallel
Strand 3
A
1760 1766anti-parallel
Strand 4
A
1785 1791parallel
Strand 5
A
1775 1779anti-parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1804 1808first strand
Strand 2
A
1813 1817anti-parallel
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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1824 1829first strand
Strand 2
A
1832 1837anti-parallel
Strand 3
A
1855 1858anti-parallel
Strand 4
A
1863 1865anti-parallel
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There are 5 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1868 1877first strand
Strand 2
A
1882 1888anti-parallel
Strand 3
A
1950 1957anti-parallel
Strand 4
A
1976 1983parallel
Strand 5
A
1967 1972anti-parallel
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There are 3 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1896 1898first strand
Strand 2
A
1939 1943anti-parallel
Strand 3
A
1925 1929anti-parallel
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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1907 1909first strand
Strand 2
A
1912 1914anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1517 1519first strand
Strand 2
B
1526 1528anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1538 1542first strand
Strand 2
B
1546 1550anti-parallel
Strand 3
B
1563 1567anti-parallel
Strand 4
B
1572 1576anti-parallel
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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1581 1584first strand
Strand 2
B
1587 1592anti-parallel
Strand 3
B
1607 1614anti-parallel
Strand 4
B
1635 1642parallel
Strand 5
B
1624 1630anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1653 1656first strand
Strand 2
B
1659 1662anti-parallel
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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1673 1675first strand
Strand 2
B
1690 1692anti-parallel
Strand 3
B
1712 1714anti-parallel
Strand 4
B
1722 1725anti-parallel
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There are 5 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1732 1734first strand
Strand 2
B
1739 1744anti-parallel
Strand 3
B
1760 1766anti-parallel
Strand 4
B
1785 1791parallel
Strand 5
B
1775 1779anti-parallel
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There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1804 1808first strand
Strand 2
B
1813 1817anti-parallel
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There are 4 strands in BH sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1824 1829first strand
Strand 2
B
1832 1837anti-parallel
Strand 3
B
1855 1858anti-parallel
Strand 4
B
1863 1865anti-parallel
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There are 5 strands in BI sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1868 1877first strand
Strand 2
B
1882 1888anti-parallel
Strand 3
B
1950 1957anti-parallel
Strand 4
B
1976 1983parallel
Strand 5
B
1967 1972anti-parallel
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There are 3 strands in BJ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1896 1898first strand
Strand 2
B
1939 1943anti-parallel
Strand 3
B
1925 1929anti-parallel
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There are 2 strands in BK sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1907 1909first strand
Strand 2
B
1912 1914anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
25 27first strand
Strand 2
C
60 61anti-parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
25 27first strand
Strand 2
D
60 61anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il