Analysis of interatomic Contacts of Structural Units in PDB entry:
2V8W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2V8W entry

There are 4 chains in PDB entry 2V8W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 32VAL 217
B
ARG 51ASN 64
E
TYR 34VAL 217
F
ARG 51ASN 64
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 2V8W. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
55 58Right-handed 310
Helix 2
2
A
69 79Right-handed alpha
Helix 3
3
A
81 85Right-handed 310
Helix 4
4
A
118 125Right-handed alpha
Helix 5
5
A
125 139Right-handed alpha
Helix 6
6
A
142 147Right-handed 310
Helix 7
7
A
172 188Right-handed alpha
Helix 8
8
A
200 205Right-handed alpha
Helix 9
9
B
55 62Right-handed alpha
Helix 10
10
E
56 58Right-handed 310
Helix 11
11
E
69 77Right-handed alpha
Helix 12
12
E
81 85Right-handed 310
Helix 13
13
E
104 109Right-handed alpha
Helix 14
14
E
124 139Right-handed alpha
Helix 15
15
E
142 147Right-handed 310
Helix 16
16
E
172 187Right-handed alpha
Helix 17
17
F
55 64Right-handed alpha
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There are 2 sheets in PDB entry 2V8W. Click on sheet of interest to get list of strands forming it: AA, EA,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
60 68first strand
Strand 2
A
38 49anti-parallel
Strand 3
A
89 95anti-parallel
Strand 4
A
149 155anti-parallel
Strand 5
A
162 167anti-parallel
Strand 6
A
111 116anti-parallel
Strand 7
A
195 199anti-parallel
Strand 8
A
215 217anti-parallel
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There are 8 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
60 68first strand
Strand 2
E
38 48anti-parallel
Strand 3
E
90 95anti-parallel
Strand 4
E
149 156anti-parallel
Strand 5
E
161 167anti-parallel
Strand 6
E
111 117anti-parallel
Strand 7
E
196 199anti-parallel
Strand 8
E
215 216anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il