Analysis of interatomic Contacts of Structural Units in PDB entry:
2V90


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2V90 entry

There are 6 chains in PDB entry 2V90 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 245VAL 339
B
MET 245VAL 339
C
PRO 247VAL 339
D
PRO 247VAL 339
E
MET 245VAL 339
F
MET 245VAL 339
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2V90. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
284 289Right-handed alpha
Helix 2
2
A
309 319Right-handed alpha
Helix 3
3
B
284 289Right-handed alpha
Helix 4
4
B
309 319Right-handed alpha
Helix 5
5
C
284 289Right-handed alpha
Helix 6
6
C
309 319Right-handed alpha
Helix 7
7
D
284 289Right-handed alpha
Helix 8
8
D
309 319Right-handed alpha
Helix 9
9
E
284 289Right-handed alpha
Helix 10
10
E
309 319Right-handed alpha
Helix 11
11
F
284 289Right-handed alpha
Helix 12
12
F
309 319Right-handed alpha
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There are 12 sheets in PDB entry 2V90. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, CC, A, DB, C, EA, FA,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
248 253first strand
Strand 2
A
323 329anti-parallel
Strand 3
A
295 300anti-parallel
Strand 4
A
273 280anti-parallel
Strand 5
A
261 267anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
248 253first strand
Strand 2
A
323 329anti-parallel
Strand 3
A
295 300anti-parallel
Strand 4
A
303 304anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
248 253first strand
Strand 2
B
323 329anti-parallel
Strand 3
B
296 300anti-parallel
Strand 4
B
273 280anti-parallel
Strand 5
B
261 267anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
248 253first strand
Strand 2
B
323 329anti-parallel
Strand 3
B
296 300anti-parallel
Strand 4
B
303 304anti-parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
248 253first strand
Strand 2
C
323 329anti-parallel
Strand 3
C
296 300anti-parallel
Strand 4
C
303 304anti-parallel
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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
273 280first strand
Strand 2
C
261 267anti-parallel
Strand 3
E
336 339anti-parallel
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There are 3 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
336 339first strand
Strand 2
E
261 267anti-parallel
Strand 3
E
273 280anti-parallel
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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
248 253first strand
Strand 2
D
323 329anti-parallel
Strand 3
D
296 300anti-parallel
Strand 4
D
303 304anti-parallel
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There are 3 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
273 280first strand
Strand 2
D
261 267anti-parallel
Strand 3
F
336 339anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
336 339first strand
Strand 2
F
261 267anti-parallel
Strand 3
F
273 280anti-parallel
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There are 4 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
248 253first strand
Strand 2
E
323 329anti-parallel
Strand 3
E
296 300anti-parallel
Strand 4
E
303 304anti-parallel
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There are 4 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
248 253first strand
Strand 2
F
323 329anti-parallel
Strand 3
F
296 300anti-parallel
Strand 4
F
303 304anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il