Analysis of interatomic Contacts of Structural Units in PDB entry:
2V9W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2V9W entry

There are 8 chains in PDB entry 2V9W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 344
B
 MET 1ALA 343
C
 G 1 G 13
D
 T 1 G 5
D
 A 7 C 18
E
 G 1 G 13
F
 C 3 G 5
F
 A 7 C 18
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 2V9W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 20Right-handed alpha
Helix 2
2
A
47 52Right-handed alpha
Helix 3
3
A
60 68Right-handed alpha
Helix 4
4
A
77 96Right-handed alpha
Helix 5
5
A
112 115Right-handed 310
Helix 6
6
A
117 134Right-handed alpha
Helix 7
7
A
147 159Right-handed alpha
Helix 8
8
A
167 178Right-handed alpha
Helix 9
9
A
187 195Right-handed alpha
Helix 10
10
A
196 198Right-handed 310
Helix 11
11
A
203 208Right-handed 310
Helix 12
12
A
209 218Right-handed alpha
Helix 13
13
A
218 230Right-handed alpha
Helix 14
14
A
257 260Right-handed 310
Helix 15
15
A
261 276Right-handed alpha
Helix 16
16
A
307 324Right-handed alpha
Helix 17
17
B
10 20Right-handed alpha
Helix 18
18
B
21 24Right-handed 310
Helix 19
19
B
47 52Right-handed alpha
Helix 20
20
B
60 68Right-handed alpha
Helix 21
21
B
77 93Right-handed alpha
Helix 22
22
B
112 115Right-handed 310
Helix 23
23
B
117 134Right-handed alpha
Helix 24
24
B
147 159Right-handed alpha
Helix 25
25
B
167 178Right-handed alpha
Helix 26
26
B
187 196Right-handed alpha
Helix 27
27
B
202 208Right-handed 310
Helix 28
28
B
209 218Right-handed alpha
Helix 29
29
B
218 230Right-handed alpha
Helix 30
30
B
257 276Right-handed alpha
Helix 31
31
B
307 326Right-handed alpha
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There are 6 sheets in PDB entry 2V9W. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 100first strand
Strand 2
A
106 110anti-parallel
Strand 3
A
3 8anti-parallel
Strand 4
A
140 145anti-parallel
Strand 5
A
163 165parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 43first strand
Strand 2
A
28 33anti-parallel
Strand 3
A
72 75parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 248first strand
Strand 2
A
332 340anti-parallel
Strand 3
A
281 289anti-parallel
Strand 4
A
295 301anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 103first strand
Strand 2
B
106 110anti-parallel
Strand 3
B
3 8anti-parallel
Strand 4
B
140 145anti-parallel
Strand 5
B
163 165parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 46first strand
Strand 2
B
28 33anti-parallel
Strand 3
B
72 75parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
245 255first strand
Strand 2
B
330 337anti-parallel
Strand 3
B
283 290anti-parallel
Strand 4
B
295 301anti-parallel
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