Analysis of interatomic Contacts of Structural Units in PDB entry:
2VBK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VBK entry

There is 1 chain in PDB entry 2VBK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 112ILE 622
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 2VBK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
112 123Right-handed alpha
Helix 2
2
A
124 128Right-handed 310
Helix 3
3
A
133 137Right-handed 310
Helix 4
4
A
152 157Right-handed alpha
Helix 5
5
A
162 166Right-handed 310
Helix 6
6
A
175 188Right-handed alpha
Helix 7
7
A
586 590Right-handed 310
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There are 6 sheets in PDB entry 2VBK. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 140first strand
Strand 2
A
150 151anti-parallel
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There are 14 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 196first strand
Strand 2
A
218 221parallel
Strand 3
A
251 254parallel
Strand 4
A
281 287parallel
Strand 5
A
303 309parallel
Strand 6
A
327 332parallel
Strand 7
A
366 371parallel
Strand 8
A
389 394parallel
Strand 9
A
412 418parallel
Strand 10
A
447 450parallel
Strand 11
A
477 480parallel
Strand 12
A
500 503parallel
Strand 13
A
519 522parallel
Strand 14
A
541 543parallel
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There are 14 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 208first strand
Strand 2
A
228 231parallel
Strand 3
A
257 259parallel
Strand 4
A
290 292parallel
Strand 5
A
312 314parallel
Strand 6
A
335 337parallel
Strand 7
A
374 377parallel
Strand 8
A
396 401parallel
Strand 9
A
418 424parallel
Strand 10
A
450 455parallel
Strand 11
A
483 484parallel
Strand 12
A
506 507parallel
Strand 13
A
525 527parallel
Strand 14
A
546 548parallel
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There are 13 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 214first strand
Strand 2
A
238 242parallel
Strand 3
A
265 269parallel
Strand 4
A
292 301parallel
Strand 5
A
314 323parallel
Strand 6
A
347 352parallel
Strand 7
A
381 385parallel
Strand 8
A
404 408parallel
Strand 9
A
433 437parallel
Strand 10
A
466 470parallel
Strand 11
A
491 494parallel
Strand 12
A
511 514parallel
Strand 13
A
529 532parallel
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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
552 557first strand
Strand 2
A
615 621anti-parallel
Strand 3
A
578 582anti-parallel
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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
565 569first strand
Strand 2
A
600 604anti-parallel
Strand 3
A
593 597anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il