Analysis of interatomic Contacts of Structural Units in PDB entry:
2VDB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VDB entry

There are 2 chains in PDB entry 2VDB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 6GLY 584
B
 HIS -1ALA 53
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 2VDB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 15Right-handed alpha
Helix 2
2
A
16 31Right-handed alpha
Helix 3
3
A
35 45Right-handed alpha
Helix 4
4
A
65 74Right-handed alpha
Helix 5
5
A
86 90Right-handed 310
Helix 6
6
A
99 106Right-handed alpha
Helix 7
7
A
119 130Right-handed alpha
Helix 8
8
A
130 146Right-handed alpha
Helix 9
9
A
150 169Right-handed alpha
Helix 10
10
A
174 206Right-handed alpha
Helix 11
11
A
206 223Right-handed alpha
Helix 12
12
A
227 246Right-handed alpha
Helix 13
13
A
249 267Right-handed alpha
Helix 14
14
A
267 272Right-handed alpha
Helix 15
15
A
275 280Right-handed alpha
Helix 16
16
A
282 292Right-handed alpha
Helix 17
17
A
305 310Right-handed alpha
Helix 18
18
A
314 322Right-handed alpha
Helix 19
19
A
322 338Right-handed alpha
Helix 20
20
A
342 361Right-handed alpha
Helix 21
21
A
365 371Right-handed alpha
Helix 22
22
A
372 375Right-handed 310
Helix 23
23
A
376 398Right-handed alpha
Helix 24
24
A
399 415Right-handed alpha
Helix 25
25
A
419 439Right-handed alpha
Helix 26
26
A
444 466Right-handed alpha
Helix 27
27
A
470 478Right-handed alpha
Helix 28
28
A
480 490Right-handed alpha
Helix 29
29
A
503 508Right-handed 310
Helix 30
30
A
510 516Right-handed 310
Helix 31
31
A
517 536Right-handed alpha
Helix 32
32
A
542 558Right-handed alpha
Helix 33
33
A
563 581Right-handed alpha
Helix 34
34
B
1 20Right-handed alpha
Helix 35
35
B
25 35Right-handed alpha
Helix 36
36
B
37 53Right-handed alpha
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There are no sheets in PDB entry 2VDB
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