Analysis of interatomic Contacts of Structural Units in PDB entry:
2VES


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VES entry

There are 3 chains in PDB entry 2VES (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 294
B
 MET 1ASP 288
C
 MET 1PRO 299
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 2VES. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
53 56Right-handed 310
Helix 2
2
A
76 87Right-handed alpha
Helix 3
3
A
107 118Right-handed alpha
Helix 4
4
A
180 185Right-handed alpha
Helix 5
5
A
194 203Right-handed alpha
Helix 6
6
A
232 247Right-handed alpha
Helix 7
7
A
248 250Right-handed 310
Helix 8
8
A
263 277Right-handed alpha
Helix 9
9
A
288 292Right-handed 310
Helix 10
10
B
53 56Right-handed 310
Helix 11
11
B
76 86Right-handed alpha
Helix 12
12
B
107 118Right-handed alpha
Helix 13
13
B
180 185Right-handed alpha
Helix 14
14
B
194 203Right-handed alpha
Helix 15
15
B
232 247Right-handed alpha
Helix 16
16
B
248 250Right-handed 310
Helix 17
17
B
263 277Right-handed alpha
Helix 18
18
C
53 56Right-handed 310
Helix 19
19
C
76 86Right-handed alpha
Helix 20
20
C
107 118Right-handed alpha
Helix 21
21
C
177 185Right-handed alpha
Helix 22
22
C
194 202Right-handed alpha
Helix 23
23
C
210 214Right-handed 310
Helix 24
24
C
232 247Right-handed alpha
Helix 25
25
C
248 250Right-handed 310
Helix 26
26
C
263 277Right-handed alpha
Back to top of page

There are 18 sheets in PDB entry 2VES. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, BA, BB, BC, BD, BE, BF, CA, CB, CC, CD, CE, CF,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
119 125anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 16first strand
Strand 2
A
23 30anti-parallel
Strand 3
A
91 95anti-parallel
Strand 4
A
37 41parallel
Strand 5
A
48 51anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 68first strand
Strand 2
A
71 73anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 139first strand
Strand 2
A
142 147anti-parallel
Strand 3
A
252 260anti-parallel
Strand 4
A
128 131parallel
Strand 5
A
281 284anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 139first strand
Strand 2
A
142 147anti-parallel
Strand 3
A
252 260anti-parallel
Strand 4
A
152 157parallel
Strand 5
A
171 175anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 193first strand
Strand 2
A
215 217parallel
Back to list of sheets
Back to top of page

There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
119 125anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 16first strand
Strand 2
B
23 30anti-parallel
Strand 3
B
91 95anti-parallel
Strand 4
B
37 41parallel
Strand 5
B
48 51anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 68first strand
Strand 2
B
71 74anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 139first strand
Strand 2
B
142 147anti-parallel
Strand 3
B
252 260anti-parallel
Strand 4
B
128 131parallel
Strand 5
B
281 284anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 139first strand
Strand 2
B
142 147anti-parallel
Strand 3
B
252 260anti-parallel
Strand 4
B
152 157parallel
Strand 5
B
171 175anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 193first strand
Strand 2
B
215 217parallel
Back to list of sheets
Back to top of page

There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 7first strand
Strand 2
C
119 125anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 16first strand
Strand 2
C
23 29anti-parallel
Strand 3
C
91 95anti-parallel
Strand 4
C
37 41parallel
Strand 5
C
48 51anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
65 68first strand
Strand 2
C
71 74anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
135 139first strand
Strand 2
C
142 147anti-parallel
Strand 3
C
252 260anti-parallel
Strand 4
C
128 131parallel
Strand 5
C
281 284anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in CE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
135 139first strand
Strand 2
C
142 147anti-parallel
Strand 3
C
252 260anti-parallel
Strand 4
C
152 157parallel
Strand 5
C
171 175anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in CF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
191 193first strand
Strand 2
C
215 217parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il