Analysis of interatomic Contacts of Structural Units in PDB entry:
2VGB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VGB entry

There are 4 chains in PDB entry 2VGB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLN 57ILE 573
B
GLN 57ILE 573
C
GLN 57ILE 573
D
GLN 57ILE 573
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 98 helices in PDB entry 2VGB. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
60 65Right-handed alpha
Helix 2
2
A
68 74Right-handed alpha
Helix 3
3
A
95 99Right-handed 310
Helix 4
4
A
100 111Right-handed alpha
Helix 5
5
A
123 140Right-handed alpha
Helix 6
6
A
188 193Right-handed 310
Helix 7
7
A
206 211Right-handed alpha
Helix 8
8
A
265 278Right-handed alpha
Helix 9
9
A
290 302Right-handed alpha
Helix 10
10
A
303 306Right-handed 310
Helix 11
11
A
316 322Right-handed alpha
Helix 12
12
A
322 330Right-handed alpha
Helix 13
13
A
337 344Right-handed alpha
Helix 14
14
A
345 347Right-handed 310
Helix 15
15
A
348 364Right-handed alpha
Helix 16
16
A
374 379Right-handed 310
Helix 17
17
A
384 398Right-handed alpha
Helix 18
18
A
405 410Right-handed alpha
Helix 19
19
A
413 432Right-handed alpha
Helix 20
20
A
433 445Right-handed alpha
Helix 21
21
A
450 466Right-handed alpha
Helix 22
22
A
478 486Right-handed alpha
Helix 23
23
A
499 506Right-handed alpha
Helix 24
24
A
507 509Right-handed 310
Helix 25
25
A
524 543Right-handed alpha
Helix 26
26
B
60 65Right-handed alpha
Helix 27
27
B
68 74Right-handed alpha
Helix 28
28
B
95 99Right-handed 310
Helix 29
29
B
100 111Right-handed alpha
Helix 30
30
B
123 140Right-handed alpha
Helix 31
31
B
206 211Right-handed alpha
Helix 32
32
B
265 278Right-handed alpha
Helix 33
33
B
290 302Right-handed alpha
Helix 34
34
B
303 306Right-handed 310
Helix 35
35
B
316 322Right-handed alpha
Helix 36
36
B
322 330Right-handed alpha
Helix 37
37
B
337 344Right-handed alpha
Helix 38
38
B
345 347Right-handed 310
Helix 39
39
B
348 364Right-handed alpha
Helix 40
40
B
374 379Right-handed 310
Helix 41
41
B
384 398Right-handed alpha
Helix 42
42
B
405 410Right-handed alpha
Helix 43
43
B
413 431Right-handed alpha
Helix 44
44
B
433 445Right-handed alpha
Helix 45
45
B
450 466Right-handed alpha
Helix 46
46
B
478 487Right-handed alpha
Helix 47
47
B
499 506Right-handed alpha
Helix 48
48
B
507 509Right-handed 310
Helix 49
49
B
524 543Right-handed alpha
Helix 50
50
C
60 65Right-handed alpha
Helix 51
51
C
68 74Right-handed alpha
Helix 52
52
C
95 99Right-handed 310
Helix 53
53
C
100 111Right-handed alpha
Helix 54
54
C
123 140Right-handed alpha
Helix 55
55
C
188 192Right-handed 310
Helix 56
56
C
206 211Right-handed alpha
Helix 57
57
C
265 278Right-handed alpha
Helix 58
58
C
290 302Right-handed alpha
Helix 59
59
C
303 306Right-handed 310
Helix 60
60
C
316 322Right-handed alpha
Helix 61
61
C
322 330Right-handed alpha
Helix 62
62
C
337 344Right-handed alpha
Helix 63
63
C
345 347Right-handed 310
Helix 64
64
C
348 364Right-handed alpha
Helix 65
65
C
374 379Right-handed 310
Helix 66
66
C
384 398Right-handed alpha
Helix 67
67
C
405 410Right-handed alpha
Helix 68
68
C
413 432Right-handed alpha
Helix 69
69
C
433 445Right-handed alpha
Helix 70
70
C
450 467Right-handed alpha
Helix 71
71
C
478 486Right-handed alpha
Helix 72
72
C
499 506Right-handed alpha
Helix 73
73
C
507 509Right-handed 310
Helix 74
74
C
524 543Right-handed alpha
Helix 75
75
D
60 65Right-handed alpha
Helix 76
76
D
68 74Right-handed alpha
Helix 77
77
D
95 99Right-handed 310
Helix 78
78
D
100 111Right-handed alpha
Helix 79
79
D
123 140Right-handed alpha
Helix 80
80
D
188 193Right-handed 310
Helix 81
81
D
206 211Right-handed alpha
Helix 82
82
D
265 278Right-handed alpha
Helix 83
83
D
290 302Right-handed alpha
Helix 84
84
D
303 306Right-handed 310
Helix 85
85
D
316 322Right-handed alpha
Helix 86
86
D
322 330Right-handed alpha
Helix 87
87
D
337 344Right-handed alpha
Helix 88
88
D
348 364Right-handed alpha
Helix 89
89
D
374 379Right-handed 310
Helix 90
90
D
384 398Right-handed alpha
Helix 91
91
D
405 410Right-handed alpha
Helix 92
92
D
413 431Right-handed alpha
Helix 93
93
D
433 445Right-handed alpha
Helix 94
94
D
450 466Right-handed alpha
Helix 95
95
D
478 486Right-handed alpha
Helix 96
96
D
499 506Right-handed alpha
Helix 97
97
D
507 509Right-handed 310
Helix 98
98
D
524 543Right-handed alpha
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There are 14 sheets in PDB entry 2VGB. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, CA, CB, CC, CD, DA, DB, C,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
89 93first strand
Strand 2
A
401 404parallel
Strand 3
A
367 370parallel
Strand 4
A
332 336parallel
Strand 5
A
309 314parallel
Strand 6
A
282 285parallel
Strand 7
A
152 156parallel
Strand 8
A
112 118parallel
Strand 9
A
89 93parallel
Strand 10
A
89 93first strand
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
175 177first strand
Strand 2
A
244 246anti-parallel
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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
199 201first strand
Strand 2
A
182 186parallel
Strand 3
A
235 242anti-parallel
Strand 4
A
224 231anti-parallel
Strand 5
A
216 219anti-parallel
Strand 6
A
252 253anti-parallel
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There are 10 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
512 516first strand
Strand 2
A
492 497parallel
Strand 3
A
470 474parallel
Strand 4
A
551 557parallel
Strand 5
A
565 572anti-parallel
Strand 6
B
565 572anti-parallel
Strand 7
B
551 557anti-parallel
Strand 8
B
470 474parallel
Strand 9
B
492 497parallel
Strand 10
B
512 516parallel
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There are 9 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
89 93first strand
Strand 2
B
401 404parallel
Strand 3
B
367 370parallel
Strand 4
B
332 336parallel
Strand 5
B
309 314parallel
Strand 6
B
282 285parallel
Strand 7
B
152 156parallel
Strand 8
B
112 118parallel
Strand 9
B
89 93parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
176 177first strand
Strand 2
B
244 245anti-parallel
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There are 6 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
199 201first strand
Strand 2
B
182 186parallel
Strand 3
B
238 242anti-parallel
Strand 4
B
224 227anti-parallel
Strand 5
B
216 219anti-parallel
Strand 6
B
252 253anti-parallel
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There are 9 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
89 93first strand
Strand 2
C
401 404parallel
Strand 3
C
367 370parallel
Strand 4
C
332 336parallel
Strand 5
C
309 314parallel
Strand 6
C
282 285parallel
Strand 7
C
152 156parallel
Strand 8
C
112 118parallel
Strand 9
C
89 93parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
175 177first strand
Strand 2
C
244 246anti-parallel
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There are 6 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
199 201first strand
Strand 2
C
182 186parallel
Strand 3
C
235 242anti-parallel
Strand 4
C
224 232anti-parallel
Strand 5
C
216 219anti-parallel
Strand 6
C
252 253anti-parallel
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There are 10 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
512 516first strand
Strand 2
C
492 497parallel
Strand 3
C
470 474parallel
Strand 4
C
551 557parallel
Strand 5
C
565 572anti-parallel
Strand 6
D
565 572anti-parallel
Strand 7
D
551 557anti-parallel
Strand 8
D
470 474parallel
Strand 9
D
492 497parallel
Strand 10
D
512 516parallel
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There are 17 strands in DA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
89 93first strand
Strand 2
D
401 404parallel
Strand 3
D
367 370parallel
Strand 4
D
112 118first strand
Strand 5
D
89 93parallel
Strand 6
D
152 156first strand
Strand 7
D
112 118parallel
Strand 8
D
282 285first strand
Strand 9
D
152 156parallel
Strand 10
D
309 314first strand
Strand 11
D
282 285parallel
Strand 12
D
332 336first strand
Strand 13
D
309 314parallel
Strand 14
D
367 370first strand
Strand 15
D
332 336parallel
Strand 16
D
401 404first strand
Strand 17
D
89 93parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
175 177first strand
Strand 2
D
244 246anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
199 201first strand
Strand 2
D
182 186parallel
Strand 3
D
235 242anti-parallel
Strand 4
D
224 232anti-parallel
Strand 5
D
216 219anti-parallel
Strand 6
D
252 253anti-parallel
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