Analysis of interatomic Contacts of Structural Units in PDB entry:
2VGG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VGG entry

There are 4 chains in PDB entry 2VGG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 64ILE 573
B
 GLN 57ILE 573
C
 GLN 58ILE 573
D
 PRO 62ILE 573
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 94 helices in PDB entry 2VGG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
68 75Right-handed alpha
Helix 2
2
A
95 99Right-handed 310
Helix 3
3
A
100 111Right-handed alpha
Helix 4
4
A
123 140Right-handed alpha
Helix 5
5
A
188 194Right-handed 310
Helix 6
6
A
206 211Right-handed alpha
Helix 7
7
A
265 279Right-handed alpha
Helix 8
8
A
290 302Right-handed alpha
Helix 9
9
A
303 306Right-handed 310
Helix 10
10
A
316 322Right-handed alpha
Helix 11
11
A
322 330Right-handed alpha
Helix 12
12
A
337 344Right-handed alpha
Helix 13
13
A
345 347Right-handed 310
Helix 14
14
A
348 364Right-handed alpha
Helix 15
15
A
374 379Right-handed 310
Helix 16
16
A
384 398Right-handed alpha
Helix 17
17
A
405 410Right-handed alpha
Helix 18
18
A
413 432Right-handed alpha
Helix 19
19
A
433 445Right-handed alpha
Helix 20
20
A
450 466Right-handed alpha
Helix 21
21
A
478 487Right-handed alpha
Helix 22
22
A
499 506Right-handed alpha
Helix 23
23
A
507 509Right-handed 310
Helix 24
24
A
526 543Right-handed alpha
Helix 25
25
B
68 75Right-handed alpha
Helix 26
26
B
95 99Right-handed 310
Helix 27
27
B
100 111Right-handed alpha
Helix 28
28
B
123 140Right-handed alpha
Helix 29
29
B
206 211Right-handed alpha
Helix 30
30
B
265 279Right-handed alpha
Helix 31
31
B
290 302Right-handed alpha
Helix 32
32
B
303 306Right-handed 310
Helix 33
33
B
316 322Right-handed alpha
Helix 34
34
B
322 330Right-handed alpha
Helix 35
35
B
337 344Right-handed alpha
Helix 36
36
B
345 347Right-handed 310
Helix 37
37
B
348 364Right-handed alpha
Helix 38
38
B
374 379Right-handed 310
Helix 39
39
B
384 398Right-handed alpha
Helix 40
40
B
405 410Right-handed alpha
Helix 41
41
B
413 430Right-handed alpha
Helix 42
42
B
433 445Right-handed alpha
Helix 43
43
B
450 467Right-handed alpha
Helix 44
44
B
478 487Right-handed alpha
Helix 45
45
B
499 506Right-handed alpha
Helix 46
46
B
507 509Right-handed 310
Helix 47
47
B
524 543Right-handed alpha
Helix 48
48
C
68 75Right-handed alpha
Helix 49
49
C
95 99Right-handed 310
Helix 50
50
C
100 111Right-handed alpha
Helix 51
51
C
123 140Right-handed alpha
Helix 52
52
C
188 192Right-handed 310
Helix 53
53
C
206 211Right-handed alpha
Helix 54
54
C
265 279Right-handed alpha
Helix 55
55
C
290 302Right-handed alpha
Helix 56
56
C
303 306Right-handed 310
Helix 57
57
C
316 322Right-handed alpha
Helix 58
58
C
322 330Right-handed alpha
Helix 59
59
C
337 344Right-handed alpha
Helix 60
60
C
345 347Right-handed 310
Helix 61
61
C
348 364Right-handed alpha
Helix 62
62
C
374 379Right-handed 310
Helix 63
63
C
384 398Right-handed alpha
Helix 64
64
C
405 410Right-handed alpha
Helix 65
65
C
413 430Right-handed alpha
Helix 66
66
C
433 445Right-handed alpha
Helix 67
67
C
450 467Right-handed alpha
Helix 68
68
C
478 487Right-handed alpha
Helix 69
69
C
499 506Right-handed alpha
Helix 70
70
C
507 509Right-handed 310
Helix 71
71
C
524 543Right-handed alpha
Helix 72
72
D
68 75Right-handed alpha
Helix 73
73
D
95 99Right-handed 310
Helix 74
74
D
100 111Right-handed alpha
Helix 75
75
D
123 140Right-handed alpha
Helix 76
76
D
206 211Right-handed alpha
Helix 77
77
D
265 279Right-handed alpha
Helix 78
78
D
290 302Right-handed alpha
Helix 79
79
D
303 306Right-handed 310
Helix 80
80
D
316 322Right-handed alpha
Helix 81
81
D
322 330Right-handed alpha
Helix 82
82
D
337 344Right-handed alpha
Helix 83
83
D
345 347Right-handed 310
Helix 84
84
D
348 364Right-handed alpha
Helix 85
85
D
374 379Right-handed 310
Helix 86
86
D
384 398Right-handed alpha
Helix 87
87
D
405 410Right-handed alpha
Helix 88
88
D
413 432Right-handed alpha
Helix 89
89
D
433 445Right-handed alpha
Helix 90
90
D
450 466Right-handed alpha
Helix 91
91
D
478 487Right-handed alpha
Helix 92
92
D
499 506Right-handed alpha
Helix 93
93
D
507 509Right-handed 310
Helix 94
94
D
524 543Right-handed alpha
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There are 16 sheets in PDB entry 2VGG. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, CA, CB, CC, CD, DA, DB, C, DD,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 94first strand
Strand 2
A
401 404parallel
Strand 3
A
367 370parallel
Strand 4
A
333 336parallel
Strand 5
A
309 314parallel
Strand 6
A
282 285parallel
Strand 7
A
152 156parallel
Strand 8
A
112 118parallel
Strand 9
A
89 94parallel
Strand 10
A
89 94first strand
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 177first strand
Strand 2
A
244 246anti-parallel
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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 201first strand
Strand 2
A
182 186parallel
Strand 3
A
236 242anti-parallel
Strand 4
A
224 228anti-parallel
Strand 5
A
216 219anti-parallel
Strand 6
A
252 253anti-parallel
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There are 10 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
512 516first strand
Strand 2
A
492 497parallel
Strand 3
A
470 474parallel
Strand 4
A
551 557parallel
Strand 5
A
565 572anti-parallel
Strand 6
B
565 572anti-parallel
Strand 7
B
551 557anti-parallel
Strand 8
B
470 474parallel
Strand 9
B
492 497parallel
Strand 10
B
512 516parallel
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There are 9 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 94first strand
Strand 2
B
401 404parallel
Strand 3
B
367 370parallel
Strand 4
B
333 336parallel
Strand 5
B
309 314parallel
Strand 6
B
282 285parallel
Strand 7
B
152 156parallel
Strand 8
B
112 118parallel
Strand 9
B
89 94parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 177first strand
Strand 2
B
244 245anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
184 186first strand
Strand 2
B
199 201parallel
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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
224 227first strand
Strand 2
B
216 219anti-parallel
Strand 3
B
252 253anti-parallel
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There are 9 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
89 94first strand
Strand 2
C
401 404parallel
Strand 3
C
367 370parallel
Strand 4
C
333 336parallel
Strand 5
C
309 314parallel
Strand 6
C
282 285parallel
Strand 7
C
152 156parallel
Strand 8
C
114 118parallel
Strand 9
C
89 94parallel
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There are 7 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
162 163first strand
Strand 2
C
251 253anti-parallel
Strand 3
C
215 219anti-parallel
Strand 4
C
224 230anti-parallel
Strand 5
C
236 242anti-parallel
Strand 6
C
182 186anti-parallel
Strand 7
C
199 201parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
175 177first strand
Strand 2
C
244 246anti-parallel
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There are 10 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
512 516first strand
Strand 2
C
492 497parallel
Strand 3
C
470 474parallel
Strand 4
C
551 557parallel
Strand 5
C
565 572anti-parallel
Strand 6
D
565 572anti-parallel
Strand 7
D
551 557anti-parallel
Strand 8
D
470 474parallel
Strand 9
D
492 497parallel
Strand 10
D
512 516parallel
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There are 17 strands in DA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
89 94first strand
Strand 2
D
401 404parallel
Strand 3
D
367 370parallel
Strand 4
D
114 118first strand
Strand 5
D
89 94parallel
Strand 6
D
152 156first strand
Strand 7
D
114 118parallel
Strand 8
D
282 285first strand
Strand 9
D
152 156parallel
Strand 10
D
309 314first strand
Strand 11
D
282 285parallel
Strand 12
D
333 336first strand
Strand 13
D
309 314parallel
Strand 14
D
367 370first strand
Strand 15
D
333 336parallel
Strand 16
D
401 404first strand
Strand 17
D
89 94parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
175 177first strand
Strand 2
D
244 246anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
185 186first strand
Strand 2
D
200 201parallel
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There are 4 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
237 242first strand
Strand 2
D
224 230anti-parallel
Strand 3
D
216 219anti-parallel
Strand 4
D
252 253anti-parallel
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