Analysis of interatomic Contacts of Structural Units in PDB entry:
2VIF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VIF entry

There are 3 chains in PDB entry 2VIF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER -1GLN 496
P
ASN 566ASN 567
P
VAL 569THR 574
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 2VIF. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
371 383Right-handed alpha
Helix 2
2
A
390 398Right-handed alpha
Helix 3
3
A
453 468Right-handed alpha
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There are 2 sheets in PDB entry 2VIF. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
406 410first strand
Strand 2
A
418 424anti-parallel
Strand 3
A
427 436anti-parallel
Strand 4
A
439 442anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
483 484first strand
Strand 2
A
471 473anti-parallel
Strand 3
P
570 571anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il