Analysis of interatomic Contacts of Structural Units in PDB entry:
2VM8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VM8 entry

There are 4 chains in PDB entry 2VM8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 14GLU 490
B
ASP 15GLU 490
C
ASP 15GLU 490
D
ASP 15GLU 490
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 76 helices in PDB entry 2VM8. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
88 99Right-handed alpha
Helix 2
2
A
115 131Right-handed alpha
Helix 3
3
A
145 159Right-handed alpha
Helix 4
4
A
177 192Right-handed alpha
Helix 5
5
A
201 214Right-handed alpha
Helix 6
6
A
220 227Right-handed alpha
Helix 7
7
A
228 247Right-handed alpha
Helix 8
8
A
257 270Right-handed alpha
Helix 9
9
A
279 285Right-handed alpha
Helix 10
10
A
286 292Right-handed 310
Helix 11
11
A
294 301Right-handed alpha
Helix 12
12
A
312 323Right-handed alpha
Helix 13
13
A
337 342Right-handed alpha
Helix 14
14
A
343 345Right-handed 310
Helix 15
15
A
347 351Right-handed 310
Helix 16
16
A
360 370Right-handed alpha
Helix 17
17
A
376 385Right-handed alpha
Helix 18
18
A
385 393Right-handed alpha
Helix 19
19
A
475 488Right-handed alpha
Helix 20
20
B
88 99Right-handed alpha
Helix 21
21
B
115 131Right-handed alpha
Helix 22
22
B
147 159Right-handed alpha
Helix 23
23
B
177 192Right-handed alpha
Helix 24
24
B
201 215Right-handed alpha
Helix 25
25
B
220 226Right-handed alpha
Helix 26
26
B
228 247Right-handed alpha
Helix 27
27
B
257 270Right-handed alpha
Helix 28
28
B
279 285Right-handed alpha
Helix 29
29
B
286 292Right-handed 310
Helix 30
30
B
294 299Right-handed alpha
Helix 31
31
B
300 302Right-handed 310
Helix 32
32
B
312 323Right-handed alpha
Helix 33
33
B
337 342Right-handed alpha
Helix 34
34
B
343 345Right-handed 310
Helix 35
35
B
347 351Right-handed 310
Helix 36
36
B
360 370Right-handed alpha
Helix 37
37
B
376 385Right-handed alpha
Helix 38
38
B
385 392Right-handed alpha
Helix 39
39
B
475 487Right-handed alpha
Helix 40
40
C
88 99Right-handed alpha
Helix 41
41
C
115 131Right-handed alpha
Helix 42
42
C
147 159Right-handed alpha
Helix 43
43
C
177 192Right-handed alpha
Helix 44
44
C
201 215Right-handed alpha
Helix 45
45
C
220 227Right-handed alpha
Helix 46
46
C
228 247Right-handed alpha
Helix 47
47
C
257 270Right-handed alpha
Helix 48
48
C
279 285Right-handed alpha
Helix 49
49
C
286 291Right-handed 310
Helix 50
50
C
294 301Right-handed alpha
Helix 51
51
C
312 323Right-handed alpha
Helix 52
52
C
337 343Right-handed alpha
Helix 53
53
C
344 351Right-handed 310
Helix 54
54
C
360 370Right-handed alpha
Helix 55
55
C
376 383Right-handed alpha
Helix 56
56
C
385 392Right-handed alpha
Helix 57
57
C
475 488Right-handed alpha
Helix 58
58
D
88 98Right-handed alpha
Helix 59
59
D
115 131Right-handed alpha
Helix 60
60
D
147 159Right-handed alpha
Helix 61
61
D
177 192Right-handed alpha
Helix 62
62
D
201 214Right-handed alpha
Helix 63
63
D
220 226Right-handed alpha
Helix 64
64
D
228 247Right-handed alpha
Helix 65
65
D
257 270Right-handed alpha
Helix 66
66
D
279 285Right-handed alpha
Helix 67
67
D
286 292Right-handed 310
Helix 68
68
D
294 301Right-handed alpha
Helix 69
69
D
312 323Right-handed alpha
Helix 70
70
D
337 342Right-handed alpha
Helix 71
71
D
343 345Right-handed 310
Helix 72
72
D
347 351Right-handed 310
Helix 73
73
D
360 370Right-handed alpha
Helix 74
74
D
376 385Right-handed alpha
Helix 75
75
D
385 392Right-handed alpha
Helix 76
76
D
475 488Right-handed alpha
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There are 16 sheets in PDB entry 2VM8. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, CA, CB, CC, CD, A, DB, C, DD,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
41 46first strand
Strand 2
A
30 38anti-parallel
Strand 3
A
17 25anti-parallel
Strand 4
A
57 59parallel
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There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
41 46first strand
Strand 2
A
30 38anti-parallel
Strand 3
A
17 25anti-parallel
Strand 4
A
64 67parallel
Strand 5
A
409 419anti-parallel
Strand 6
A
438 448anti-parallel
Strand 7
A
451 455anti-parallel
Strand 8
A
458 459anti-parallel
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There are 7 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
69 74first strand
Strand 2
A
101 108parallel
Strand 3
A
134 140parallel
Strand 4
A
163 167parallel
Strand 5
A
194 198parallel
Strand 6
A
250 255parallel
Strand 7
A
274 278parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
79 80first strand
Strand 2
A
83 84anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
41 46first strand
Strand 2
B
34 38anti-parallel
Strand 3
B
17 20anti-parallel
Strand 4
B
56 59parallel
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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
30 32first strand
Strand 2
B
23 25anti-parallel
Strand 3
B
64 67parallel
Strand 4
B
409 419anti-parallel
Strand 5
B
438 448anti-parallel
Strand 6
B
451 455anti-parallel
Strand 7
B
458 459anti-parallel
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There are 7 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
69 71first strand
Strand 2
B
101 108parallel
Strand 3
B
134 140parallel
Strand 4
B
163 167parallel
Strand 5
B
194 198parallel
Strand 6
B
250 255parallel
Strand 7
B
274 278parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
79 80first strand
Strand 2
B
83 84anti-parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
41 46first strand
Strand 2
C
34 38anti-parallel
Strand 3
C
17 20anti-parallel
Strand 4
C
56 59parallel
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There are 7 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
30 32first strand
Strand 2
C
23 25anti-parallel
Strand 3
C
64 67parallel
Strand 4
C
409 420anti-parallel
Strand 5
C
437 448anti-parallel
Strand 6
C
451 455anti-parallel
Strand 7
C
458 459anti-parallel
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There are 7 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
69 71first strand
Strand 2
C
101 108parallel
Strand 3
C
134 141parallel
Strand 4
C
163 167parallel
Strand 5
C
194 198parallel
Strand 6
C
250 255parallel
Strand 7
C
274 278parallel
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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
79 80first strand
Strand 2
C
83 84anti-parallel
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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
41 46first strand
Strand 2
D
34 38anti-parallel
Strand 3
D
17 20anti-parallel
Strand 4
D
57 59parallel
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There are 7 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
30 32first strand
Strand 2
D
23 25anti-parallel
Strand 3
D
64 67parallel
Strand 4
D
409 420anti-parallel
Strand 5
D
437 448anti-parallel
Strand 6
D
451 455anti-parallel
Strand 7
D
458 459anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
69 71first strand
Strand 2
D
101 108parallel
Strand 3
D
134 140parallel
Strand 4
D
163 167parallel
Strand 5
D
194 198parallel
Strand 6
D
250 255parallel
Strand 7
D
274 278parallel
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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
79 80first strand
Strand 2
D
83 84anti-parallel
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