Analysis of interatomic Contacts of Structural Units in PDB entry:
2VS5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VS5 entry

There are 2 chains in PDB entry 2VS5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 83ARG 365
B
 LYS 82LYS 359
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 2VS5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
84 88Right-handed 310
Helix 2
2
A
90 94Right-handed 310
Helix 3
3
A
114 125Right-handed alpha
Helix 4
4
A
138 155Right-handed alpha
Helix 5
5
A
169 173Right-handed 310
Helix 6
6
A
194 218Right-handed alpha
Helix 7
7
A
235 239Right-handed 310
Helix 8
8
A
254 258Right-handed 310
Helix 9
9
A
287 308Right-handed alpha
Helix 10
10
A
314 327Right-handed alpha
Helix 11
11
A
335 338Right-handed 310
Helix 12
12
A
340 344Right-handed 310
Helix 13
13
B
84 88Right-handed 310
Helix 14
14
B
90 94Right-handed 310
Helix 15
15
B
114 126Right-handed alpha
Helix 16
16
B
138 155Right-handed alpha
Helix 17
17
B
169 173Right-handed 310
Helix 18
18
B
194 201Right-handed alpha
Helix 19
19
B
201 213Right-handed alpha
Helix 20
20
B
214 217Right-handed 310
Helix 21
21
B
235 239Right-handed 310
Helix 22
22
B
254 258Right-handed 310
Helix 23
23
B
287 308Right-handed alpha
Helix 24
24
B
314 327Right-handed alpha
Helix 25
25
B
335 338Right-handed 310
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There are 4 sheets in PDB entry 2VS5. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 108first strand
Strand 2
A
331 333parallel
Strand 3
A
242 246parallel
Strand 4
A
279 286anti-parallel
Strand 5
A
220 224anti-parallel
Strand 6
A
129 135parallel
Strand 7
A
161 167parallel
Strand 8
A
182 188parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 230first strand
Strand 2
A
354 356anti-parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 108first strand
Strand 2
B
331 333parallel
Strand 3
B
242 246parallel
Strand 4
B
279 286anti-parallel
Strand 5
B
220 224anti-parallel
Strand 6
B
129 135parallel
Strand 7
B
161 167parallel
Strand 8
B
182 188parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
228 230first strand
Strand 2
B
354 356anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il