Analysis of interatomic Contacts of Structural Units in PDB entry:
2VT0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VT0 entry

There are 2 chains in PDB entry 2VT0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU -1LEU 498
B
 ALA 1ARG 496
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 2VT0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
86 95Right-handed alpha
Helix 2
2
A
97 110Right-handed alpha
Helix 3
3
A
150 155Right-handed alpha
Helix 4
4
A
156 168Right-handed alpha
Helix 5
5
A
182 185Right-handed 310
Helix 6
6
A
203 222Right-handed alpha
Helix 7
7
A
235 241Right-handed 310
Helix 8
8
A
252 263Right-handed alpha
Helix 9
9
A
263 270Right-handed alpha
Helix 10
10
A
286 288Right-handed 310
Helix 11
11
A
289 297Right-handed alpha
Helix 12
12
A
298 303Right-handed alpha
Helix 13
13
A
314 318Right-handed 310
Helix 14
14
A
319 331Right-handed alpha
Helix 15
15
A
356 373Right-handed alpha
Helix 16
16
A
406 409Right-handed 310
Helix 17
17
A
414 425Right-handed alpha
Helix 18
18
B
86 95Right-handed alpha
Helix 19
19
B
97 110Right-handed alpha
Helix 20
20
B
150 155Right-handed alpha
Helix 21
21
B
156 168Right-handed alpha
Helix 22
22
B
182 185Right-handed 310
Helix 23
23
B
203 223Right-handed alpha
Helix 24
24
B
235 241Right-handed 310
Helix 25
25
B
252 263Right-handed alpha
Helix 26
26
B
263 270Right-handed alpha
Helix 27
27
B
286 288Right-handed 310
Helix 28
28
B
289 297Right-handed alpha
Helix 29
29
B
298 303Right-handed alpha
Helix 30
30
B
314 318Right-handed 310
Helix 31
31
B
323 331Right-handed alpha
Helix 32
32
B
356 373Right-handed alpha
Helix 33
33
B
406 409Right-handed 310
Helix 34
34
B
414 425Right-handed alpha
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There are 6 sheets in PDB entry 2VT0. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
15 18anti-parallel
Strand 3
A
410 413anti-parallel
Strand 4
A
402 405anti-parallel
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There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 55first strand
Strand 2
A
36 43anti-parallel
Strand 3
A
488 494anti-parallel
Strand 4
A
456 462anti-parallel
Strand 5
A
444 450anti-parallel
Strand 6
A
432 438anti-parallel
Strand 7
A
65 77anti-parallel
Strand 8
A
468 474parallel
Strand 9
A
478 484anti-parallel
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There are 9 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 84first strand
Strand 2
A
377 382parallel
Strand 3
A
335 340parallel
Strand 4
A
307 311parallel
Strand 5
A
277 284parallel
Strand 6
A
229 231parallel
Strand 7
A
173 178parallel
Strand 8
A
118 123parallel
Strand 9
A
80 84parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 7first strand
Strand 2
B
15 18anti-parallel
Strand 3
B
410 413anti-parallel
Strand 4
B
402 405anti-parallel
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There are 9 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 55first strand
Strand 2
B
36 43anti-parallel
Strand 3
B
488 494anti-parallel
Strand 4
B
456 462anti-parallel
Strand 5
B
444 450anti-parallel
Strand 6
B
432 438anti-parallel
Strand 7
B
65 77anti-parallel
Strand 8
B
468 474parallel
Strand 9
B
478 484anti-parallel
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There are 9 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 84first strand
Strand 2
B
375 382parallel
Strand 3
B
335 340parallel
Strand 4
B
307 311parallel
Strand 5
B
277 284parallel
Strand 6
B
229 231parallel
Strand 7
B
173 178parallel
Strand 8
B
118 123parallel
Strand 9
B
80 84parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il