Analysis of interatomic Contacts of Structural Units in PDB entry:
2VT5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VT5 entry

There are 8 chains in PDB entry 2VT5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 9ALA 336
B
 ASP 9ALA 336
C
 ASP 9ALA 336
D
 ASP 9ALA 336
E
 ASP 9ALA 336
F
 ASP 9ALA 336
G
 ASP 9ALA 336
H
 ASP 9ALA 336
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are111 helices in PDB entry 2VT5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 25Right-handed alpha
Helix 2
2
A
28 49Right-handed alpha
Helix 3
3
A
52 57Right-handed alpha
Helix 4
4
A
72 87Right-handed alpha
Helix 5
5
A
106 108Right-handed 310
Helix 6
6
A
122 129Right-handed 310
Helix 7
7
A
148 153Right-handed 310
Helix 8
8
A
155 159Right-handed 310
Helix 9
9
A
212 219Right-handed 310
Helix 10
10
A
220 232Right-handed alpha
Helix 11
11
A
247 259Right-handed alpha
Helix 12
12
A
280 291Right-handed alpha
Helix 13
13
A
302 305Right-handed 310
Helix 14
14
A
320 334Right-handed alpha
Helix 15
15
B
12 24Right-handed alpha
Helix 16
16
B
28 49Right-handed alpha
Helix 17
17
B
52 57Right-handed alpha
Helix 18
18
B
72 87Right-handed alpha
Helix 19
19
B
122 129Right-handed 310
Helix 20
20
B
148 153Right-handed 310
Helix 21
21
B
155 157Right-handed 310
Helix 22
22
B
212 219Right-handed 310
Helix 23
23
B
220 232Right-handed alpha
Helix 24
24
B
247 259Right-handed alpha
Helix 25
25
B
280 291Right-handed alpha
Helix 26
26
B
302 305Right-handed 310
Helix 27
27
B
320 334Right-handed alpha
Helix 28
28
C
12 24Right-handed alpha
Helix 29
29
C
28 49Right-handed alpha
Helix 30
30
C
52 57Right-handed alpha
Helix 31
31
C
72 87Right-handed alpha
Helix 32
32
C
106 110Right-handed 310
Helix 33
33
C
122 129Right-handed 310
Helix 34
34
C
148 153Right-handed 310
Helix 35
35
C
155 159Right-handed 310
Helix 36
36
C
212 219Right-handed 310
Helix 37
37
C
220 232Right-handed alpha
Helix 38
38
C
247 259Right-handed alpha
Helix 39
39
C
280 291Right-handed alpha
Helix 40
40
C
302 305Right-handed 310
Helix 41
41
C
320 334Right-handed alpha
Helix 42
42
D
12 24Right-handed alpha
Helix 43
43
D
28 49Right-handed alpha
Helix 44
44
D
52 57Right-handed 310
Helix 45
45
D
72 87Right-handed alpha
Helix 46
46
D
106 108Right-handed 310
Helix 47
47
D
122 129Right-handed 310
Helix 48
48
D
148 153Right-handed 310
Helix 49
49
D
155 157Right-handed 310
Helix 50
50
D
212 219Right-handed 310
Helix 51
51
D
220 232Right-handed alpha
Helix 52
52
D
247 259Right-handed alpha
Helix 53
53
D
280 291Right-handed alpha
Helix 54
54
D
302 305Right-handed 310
Helix 55
55
D
320 334Right-handed alpha
Helix 56
56
E
12 25Right-handed alpha
Helix 57
57
E
28 49Right-handed alpha
Helix 58
58
E
52 57Right-handed alpha
Helix 59
59
E
72 88Right-handed alpha
Helix 60
60
E
106 108Right-handed 310
Helix 61
61
E
122 129Right-handed 310
Helix 62
62
E
148 153Right-handed 310
Helix 63
63
E
155 159Right-handed 310
Helix 64
64
E
212 219Right-handed 310
Helix 65
65
E
220 232Right-handed alpha
Helix 66
66
E
247 259Right-handed alpha
Helix 67
67
E
280 291Right-handed alpha
Helix 68
68
E
302 305Right-handed 310
Helix 69
69
E
320 334Right-handed alpha
Helix 70
70
F
12 24Right-handed alpha
Helix 71
71
F
28 49Right-handed alpha
Helix 72
72
F
52 57Right-handed alpha
Helix 73
73
F
72 88Right-handed alpha
Helix 74
74
F
106 108Right-handed 310
Helix 75
75
F
122 129Right-handed 310
Helix 76
76
F
148 153Right-handed 310
Helix 77
77
F
155 159Right-handed 310
Helix 78
78
F
212 219Right-handed 310
Helix 79
79
F
220 232Right-handed alpha
Helix 80
80
F
247 259Right-handed alpha
Helix 81
81
F
280 291Right-handed alpha
Helix 82
82
F
302 305Right-handed 310
Helix 83
83
F
320 335Right-handed alpha
Helix 84
84
G
12 24Right-handed alpha
Helix 85
85
G
28 49Right-handed alpha
Helix 86
86
G
52 57Right-handed alpha
Helix 87
87
G
72 87Right-handed alpha
Helix 88
88
G
106 108Right-handed 310
Helix 89
89
G
122 129Right-handed 310
Helix 90
90
G
148 153Right-handed 310
Helix 91
91
G
155 159Right-handed 310
Helix 92
92
G
212 216Right-handed 310
Helix 93
93
G
220 232Right-handed alpha
Helix 94
94
G
247 259Right-handed alpha
Helix 95
95
G
280 291Right-handed alpha
Helix 96
96
G
302 305Right-handed 310
Helix 97
97
G
320 334Right-handed alpha
Helix 98
98
H
12 24Right-handed alpha
Helix 99
99
H
28 49Right-handed alpha
Helix 100
100
H
52 57Right-handed alpha
Helix 101
101
H
72 87Right-handed alpha
Helix 102
102
H
106 108Right-handed 310
Helix 103
103
H
122 129Right-handed 310
Helix 104
104
H
148 153Right-handed 310
Helix 105
105
H
155 159Right-handed 310
Helix 106
106
H
212 219Right-handed 310
Helix 107
107
H
220 232Right-handed alpha
Helix 108
108
H
247 259Right-handed alpha
Helix 109
109
H
280 291Right-handed alpha
Helix 110
110
H
302 305Right-handed 310
Helix 111
111
H
320 334Right-handed alpha
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There are 18 sheets in PDB entry 2VT5. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB, EA, EB, FA, FB, FC, GA, GB, GC, HA, HB,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 104first strand
Strand 2
A
91 96anti-parallel
Strand 3
A
110 121parallel
Strand 4
A
132 140anti-parallel
Strand 5
A
161 167anti-parallel
Strand 6
A
171 177anti-parallel
Strand 7
A
180 186anti-parallel
Strand 8
A
193 197anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 242first strand
Strand 2
A
208 210parallel
Strand 3
A
261 264parallel
Strand 4
A
316 319anti-parallel
Strand 5
A
294 296anti-parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 104first strand
Strand 2
B
91 96anti-parallel
Strand 3
B
110 121parallel
Strand 4
B
132 140anti-parallel
Strand 5
B
159 167anti-parallel
Strand 6
B
171 177anti-parallel
Strand 7
B
180 187anti-parallel
Strand 8
B
192 197anti-parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
241 242first strand
Strand 2
B
208 210parallel
Strand 3
B
261 264parallel
Strand 4
B
316 319anti-parallel
Strand 5
B
294 296anti-parallel
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There are 8 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
103 104first strand
Strand 2
C
91 96anti-parallel
Strand 3
C
113 121parallel
Strand 4
C
132 140anti-parallel
Strand 5
C
161 167anti-parallel
Strand 6
C
171 177anti-parallel
Strand 7
C
180 187anti-parallel
Strand 8
C
192 197anti-parallel
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There are 5 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
241 242first strand
Strand 2
C
208 210parallel
Strand 3
C
261 264parallel
Strand 4
C
316 319anti-parallel
Strand 5
C
294 296anti-parallel
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There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
103 104first strand
Strand 2
D
91 96anti-parallel
Strand 3
D
110 121parallel
Strand 4
D
132 140anti-parallel
Strand 5
D
159 167anti-parallel
Strand 6
D
171 177anti-parallel
Strand 7
D
180 187anti-parallel
Strand 8
D
192 197anti-parallel
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There are 5 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
241 242first strand
Strand 2
D
208 210parallel
Strand 3
D
261 264parallel
Strand 4
D
316 319anti-parallel
Strand 5
D
294 296anti-parallel
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There are 8 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
103 104first strand
Strand 2
E
91 96anti-parallel
Strand 3
E
110 121parallel
Strand 4
E
132 140anti-parallel
Strand 5
E
161 167anti-parallel
Strand 6
E
171 177anti-parallel
Strand 7
E
180 186anti-parallel
Strand 8
E
193 197anti-parallel
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There are 5 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
241 242first strand
Strand 2
E
208 210parallel
Strand 3
E
261 264parallel
Strand 4
E
316 319anti-parallel
Strand 5
E
294 296anti-parallel
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There are 8 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
103 104first strand
Strand 2
F
91 96anti-parallel
Strand 3
F
110 121parallel
Strand 4
F
132 140anti-parallel
Strand 5
F
161 167anti-parallel
Strand 6
F
171 177anti-parallel
Strand 7
F
180 187anti-parallel
Strand 8
F
192 197anti-parallel
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There are 5 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
241 242first strand
Strand 2
F
208 210parallel
Strand 3
F
261 264parallel
Strand 4
F
316 319anti-parallel
Strand 5
F
294 296anti-parallel
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There are 2 strands in FC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
275 276first strand
Strand 2
F
313 314anti-parallel
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There are 8 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
103 104first strand
Strand 2
G
91 96anti-parallel
Strand 3
G
110 121parallel
Strand 4
G
132 140anti-parallel
Strand 5
G
161 167anti-parallel
Strand 6
G
171 177anti-parallel
Strand 7
G
180 186anti-parallel
Strand 8
G
193 197anti-parallel
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There are 5 strands in GB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
241 242first strand
Strand 2
G
208 210parallel
Strand 3
G
261 264parallel
Strand 4
G
316 319anti-parallel
Strand 5
G
294 296anti-parallel
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There are 2 strands in GC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
275 276first strand
Strand 2
G
313 314anti-parallel
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There are 8 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
103 104first strand
Strand 2
H
91 96anti-parallel
Strand 3
H
110 121parallel
Strand 4
H
132 140anti-parallel
Strand 5
H
161 167anti-parallel
Strand 6
H
171 177anti-parallel
Strand 7
H
180 186anti-parallel
Strand 8
H
193 197anti-parallel
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There are 5 strands in HB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
241 242first strand
Strand 2
H
208 210parallel
Strand 3
H
261 264parallel
Strand 4
H
316 319anti-parallel
Strand 5
H
294 296anti-parallel
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