Analysis of interatomic Contacts of Structural Units in PDB entry:
2VWJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VWJ entry

There are 2 chains in PDB entry 2VWJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1TYR 757
B
A 0 C 25
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 2VWJ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
47 52Right-handed alpha
Helix 2
2
A
89 91Right-handed 310
Helix 3
3
A
92 103Right-handed alpha
Helix 4
4
A
115 124Right-handed alpha
Helix 5
5
A
186 202Right-handed alpha
Helix 6
6
A
214 226Right-handed alpha
Helix 7
7
A
260 268Right-handed alpha
Helix 8
8
A
274 284Right-handed alpha
Helix 9
9
A
291 302Right-handed alpha
Helix 10
10
A
304 338Right-handed alpha
Helix 11
11
A
340 345Right-handed alpha
Helix 12
12
A
348 364Right-handed alpha
Helix 13
13
A
373 383Right-handed alpha
Helix 14
14
A
407 416Right-handed alpha
Helix 15
15
A
447 467Right-handed alpha
Helix 16
16
A
472 491Right-handed alpha
Helix 17
17
A
492 498Right-handed alpha
Helix 18
18
A
506 531Right-handed alpha
Helix 19
19
A
552 571Right-handed alpha
Helix 20
20
A
616 634Right-handed alpha
Helix 21
21
A
635 652Right-handed alpha
Helix 22
22
A
656 661Right-handed 310
Helix 23
23
A
677 688Right-handed alpha
Helix 24
24
A
710 712Right-handed 310
Helix 25
25
A
718 720Right-handed 310
Helix 26
26
A
728 735Right-handed alpha
Helix 27
27
A
741 747Right-handed alpha
Helix 28
28
A
751 756Right-handed alpha
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There are 8 sheets in PDB entry 2VWJ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2 10first strand
Strand 2
A
13 22anti-parallel
Strand 3
A
25 31anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
106 110first strand
Strand 2
A
37 42anti-parallel
Strand 3
A
78 86anti-parallel
Strand 4
A
70 75anti-parallel
Strand 5
A
366 367parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
55 58first strand
Strand 2
A
61 64anti-parallel
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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
181 183first strand
Strand 2
A
167 172parallel
Strand 3
A
157 164anti-parallel
Strand 4
A
137 144anti-parallel
Strand 5
A
205 208parallel
Strand 6
A
256 259parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
240 243first strand
Strand 2
A
248 251anti-parallel
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There are 6 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
535 540first strand
Strand 2
A
543 547anti-parallel
Strand 3
A
397 404anti-parallel
Strand 4
A
578 590anti-parallel
Strand 5
A
593 597anti-parallel
Strand 6
A
603 606anti-parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
431 433first strand
Strand 2
A
440 442anti-parallel
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There are 3 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
662 665first strand
Strand 2
A
698 703anti-parallel
Strand 3
A
714 716anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il