Analysis of interatomic Contacts of Structural Units in PDB entry:
2VWM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VWM entry

There are 4 chains in PDB entry 2VWM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 16LYS 243
B
 ILE 16LYS 243
K
 ARG 86ARG 139
L
 ARG 86LEU 137
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 2VWM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
55 61Right-handed 310
Helix 2
2
A
124 131Right-handed alpha
Helix 3
3
A
164 172Right-handed alpha
Helix 4
4
A
234 242Right-handed alpha
Helix 5
5
B
55 61Right-handed 310
Helix 6
6
B
124 131Right-handed alpha
Helix 7
7
B
164 172Right-handed alpha
Helix 8
8
B
234 243Right-handed alpha
Helix 9
9
K
91 96Right-handed 310
Helix 10
10
L
91 96Right-handed 310
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There are 8 sheets in PDB entry 2VWM. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, KA, KB, LA, LB,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
156 163anti-parallel
Strand 3
A
180 183anti-parallel
Strand 4
A
226 230anti-parallel
Strand 5
A
206 215anti-parallel
Strand 6
A
198 203anti-parallel
Strand 7
A
135 140anti-parallel
Strand 8
A
156 163parallel
Strand 9
A
20 21anti-parallel
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There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 34first strand
Strand 2
A
40 46anti-parallel
Strand 3
A
51 54anti-parallel
Strand 4
A
104 108anti-parallel
Strand 5
A
81 90anti-parallel
Strand 6
A
65 68anti-parallel
Strand 7
A
30 34anti-parallel
Strand 8
A
30 34first strand
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There are 9 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 21first strand
Strand 2
B
156 163anti-parallel
Strand 3
B
180 183anti-parallel
Strand 4
B
226 230anti-parallel
Strand 5
B
206 215anti-parallel
Strand 6
B
198 203anti-parallel
Strand 7
B
135 140anti-parallel
Strand 8
B
156 163parallel
Strand 9
B
20 21anti-parallel
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There are 15 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 34first strand
Strand 2
B
40 48anti-parallel
Strand 3
B
51 54anti-parallel
Strand 4
B
104 108anti-parallel
Strand 5
B
81 90anti-parallel
Strand 6
B
40 48first strand
Strand 7
B
30 34anti-parallel
Strand 8
B
51 54first strand
Strand 9
B
40 48anti-parallel
Strand 10
B
65 68first strand
Strand 11
B
30 34anti-parallel
Strand 12
B
81 90first strand
Strand 13
B
65 68anti-parallel
Strand 14
B
104 108first strand
Strand 15
B
51 54anti-parallel
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There are 2 strands in KA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
99 102first strand
Strand 2
K
107 110anti-parallel
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There are 2 strands in KB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
115 117first strand
Strand 2
K
124 126anti-parallel
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There are 2 strands in LA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
99 103first strand
Strand 2
L
106 110anti-parallel
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There are 2 strands in LB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
115 117first strand
Strand 2
L
124 126anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il