Analysis of interatomic Contacts of Structural Units in PDB entry:
2W0P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2W0P entry

There are 3 chains in PDB entry 2W0P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2236PRO 2328
B
 GLY 2236SER 2329
C
 ARG 8THR 16
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 2W0P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2237 2241Right-handed 310
Helix 2
2
A
2245 2249Right-handed 310
Helix 3
3
A
2263 2267Right-handed 310
Helix 4
4
B
2237 2241Right-handed 310
Helix 5
5
B
2245 2249Right-handed 310
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There are 4 sheets in PDB entry 2W0P. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2242 2244first strand
Strand 2
A
2257 2262anti-parallel
Strand 3
A
2293 2298anti-parallel
Strand 4
A
2282 2287anti-parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2251 2252first strand
Strand 2
A
2321 2326parallel
Strand 3
A
2303 2311anti-parallel
Strand 4
A
2271 2277anti-parallel
Strand 5
C
9 16anti-parallel
Strand 6
B
2271 2277anti-parallel
Strand 7
B
2303 2311anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2251 2252first strand
Strand 2
A
2321 2326parallel
Strand 3
A
2303 2311anti-parallel
Strand 4
A
2314 2315anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2242 2244first strand
Strand 2
B
2257 2262anti-parallel
Strand 3
B
2293 2298anti-parallel
Strand 4
B
2282 2287anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il