Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 2W3O entry
Note, this PDB entry contains
modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is
treated as heterogroup (ligand) both in the
PDB entry and in LPC/CSU analysis.
There are 6 chains in PDB entry 2W3O
(CSU analysis of residue contacts immediately below table)
Chain ID |
Initial residue | Terminal residue |
A
|
GLY 8 | GLU 107 |
B
|
GLY 8 | GLU 108 |
C
|
TYR 515 | GLY 517 |
C
|
ASP 520 | ASN 522 |
D
|
TYR 515 | GLY 517 |
D
|
ASP 520 | ASN 522 |
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There are no helices in PDB entry
2W3O
There are
4 sheets in PDB entry 2W3O. Click on sheet of
interest to get list of strands forming it:
AA,
AB,
BA,
BB,
There are 6
strands in AA sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
A
| 22 |
23 | first strand |
Strand 2 |
A
| 9 |
13 | anti-parallel |
Strand 3 |
A
| 99 |
107 | anti-parallel |
Strand 4 |
A
| 92 |
96 | anti-parallel |
Strand 5 |
A
| 73 |
74 | anti-parallel |
Strand 6 |
A
| 77 |
78 | anti-parallel |
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There are 4
strands in AB sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
A
| 30 |
33 | first strand |
Strand 2 |
A
| 51 |
56 | anti-parallel |
Strand 3 |
A
| 61 |
66 | anti-parallel |
Strand 4 |
A
| 84 |
88 | anti-parallel |
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There are 6
strands in BA sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
B
| 22 |
23 | first strand |
Strand 2 |
B
| 9 |
13 | anti-parallel |
Strand 3 |
B
| 99 |
107 | anti-parallel |
Strand 4 |
B
| 92 |
96 | anti-parallel |
Strand 5 |
B
| 73 |
74 | anti-parallel |
Strand 6 |
B
| 77 |
78 | anti-parallel |
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There are 4
strands in BB sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
B
| 30 |
33 | first strand |
Strand 2 |
B
| 51 |
56 | anti-parallel |
Strand 3 |
B
| 61 |
66 | anti-parallel |
Strand 4 |
B
| 84 |
88 | anti-parallel |
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Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il