Analysis of interatomic Contacts of Structural Units in PDB entry:
2W8K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2W8K entry

There are 4 chains in PDB entry 2W8K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
HIS 0GLU 342
P
G 1 C 13
T
A 3 C 4
T
G 6 C 18
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 2W8K. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
10 19Right-handed alpha
Helix 2
2
A
47 52Right-handed alpha
Helix 3
3
A
60 68Right-handed alpha
Helix 4
4
A
77 93Right-handed alpha
Helix 5
5
A
112 114Right-handed 310
Helix 6
6
A
117 134Right-handed alpha
Helix 7
7
A
147 158Right-handed alpha
Helix 8
8
A
167 177Right-handed alpha
Helix 9
9
A
187 197Right-handed alpha
Helix 10
10
A
201 207Right-handed alpha
Helix 11
11
A
209 218Right-handed alpha
Helix 12
12
A
218 230Right-handed alpha
Helix 13
13
A
257 277Right-handed alpha
Helix 14
14
A
307 326Right-handed alpha
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There are 3 sheets in PDB entry 2W8K. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
99 100first strand
Strand 2
A
106 110anti-parallel
Strand 3
A
3 8anti-parallel
Strand 4
A
140 145anti-parallel
Strand 5
A
162 165parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
42 46first strand
Strand 2
A
28 32anti-parallel
Strand 3
A
72 75parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
244 255first strand
Strand 2
A
330 338anti-parallel
Strand 3
A
283 290anti-parallel
Strand 4
A
295 301anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il