Analysis of interatomic Contacts of Structural Units in PDB entry:
2WLI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WLI entry

There are 2 chains in PDB entry 2WLI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 12HIS 299
B
 ILE 23HIS 299
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2WLI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
36 44Right-handed alpha
Helix 2
2
A
45 70Right-handed alpha
Helix 3
3
A
82 95Right-handed alpha
Helix 4
4
A
105 136Right-handed alpha
Helix 5
5
A
228 235Right-handed alpha
Helix 6
6
A
288 290Right-handed 310
Helix 7
7
B
36 44Right-handed alpha
Helix 8
8
B
45 70Right-handed alpha
Helix 9
9
B
82 95Right-handed alpha
Helix 10
10
B
105 136Right-handed alpha
Helix 11
11
B
228 235Right-handed alpha
Helix 12
12
B
287 290Right-handed 310
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There are 11 sheets in PDB entry 2WLI. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, BA, BB, BC, BD, BE,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 144first strand
Strand 2
A
156 165anti-parallel
Strand 3
A
148 153anti-parallel
Strand 4
A
265 267parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 144first strand
Strand 2
A
156 165anti-parallel
Strand 3
A
211 217anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 197first strand
Strand 2
A
171 185anti-parallel
Strand 3
A
204 208anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 197first strand
Strand 2
A
171 185anti-parallel
Strand 3
A
238 247anti-parallel
Strand 4
A
252 261anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 271first strand
Strand 2
A
293 294anti-parallel
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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 277first strand
Strand 2
A
283 286anti-parallel
Strand 3
B
24 26parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 144first strand
Strand 2
B
156 165anti-parallel
Strand 3
B
148 153anti-parallel
Strand 4
B
265 267parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 144first strand
Strand 2
B
156 165anti-parallel
Strand 3
B
211 217anti-parallel
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There are 7 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 197first strand
Strand 2
B
171 182anti-parallel
Strand 3
B
204 208anti-parallel
Strand 4
B
171 182anti-parallel
Strand 5
B
252 261first strand
Strand 6
B
238 247anti-parallel
Strand 7
B
171 182anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
270 271first strand
Strand 2
B
293 294anti-parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
275 277first strand
Strand 2
B
283 285anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il