Analysis of interatomic Contacts of Structural Units in PDB entry:
2WMD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WMD entry

There is 1 chain in PDB entry 2WMD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4LEU 298
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 2WMD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 28Right-handed alpha
Helix 2
2
A
41 50Right-handed alpha
Helix 3
3
A
61 70Right-handed alpha
Helix 4
4
A
80 85Right-handed alpha
Helix 5
5
A
86 104Right-handed alpha
Helix 6
6
A
116 121Right-handed alpha
Helix 7
7
A
127 143Right-handed alpha
Helix 8
8
A
157 161Right-handed 310
Helix 9
9
A
189 191Right-handed 310
Helix 10
10
A
192 202Right-handed alpha
Helix 11
11
A
203 207Right-handed 310
Helix 12
12
A
220 233Right-handed alpha
Helix 13
13
A
242 249Right-handed alpha
Helix 14
14
A
253 265Right-handed alpha
Helix 15
15
A
271 279Right-handed alpha
Helix 16
16
A
284 293Right-handed alpha
Helix 17
17
A
294 296Right-handed 310
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There are 3 sheets in PDB entry 2WMD. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 56first strand
Strand 2
A
31 36parallel
Strand 3
A
6 10parallel
Strand 4
A
74 77parallel
Strand 5
A
108 111parallel
Strand 6
A
147 151parallel
Strand 7
A
211 213parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 155first strand
Strand 2
A
185 188parallel
Strand 3
A
217 219anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 167first strand
Strand 2
A
174 176anti-parallel
Strand 3
A
236 238parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il