Analysis of interatomic Contacts of Structural Units in PDB entry:
2WNU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WNU entry

There are 6 chains in PDB entry 2WNU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLN 90SER 222
B
THR 92MET 224
C
LYS 89ASP 217
D
GLN 90SER 222
E
THR 92MET 224
F
LYS 89ASP 217
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There is 1 helix in PDB entry 2WNU. Click on helix number for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
B
123 125Right-handed 310
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There are 15 sheets in PDB entry 2WNU. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, CA, CB, A, DB, EA, EB, FA, FB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
113 118first strand
Strand 2
A
94 98anti-parallel
Strand 3
A
213 218anti-parallel
Strand 4
A
137 145anti-parallel
Strand 5
A
184 185anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
113 118first strand
Strand 2
A
94 98anti-parallel
Strand 3
A
213 218anti-parallel
Strand 4
A
137 145anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
108 109first strand
Strand 2
A
192 197anti-parallel
Strand 3
A
129 130anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
108 109first strand
Strand 2
A
192 197anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
117 122first strand
Strand 2
B
96 100anti-parallel
Strand 3
B
214 219anti-parallel
Strand 4
B
141 149anti-parallel
Strand 5
B
186 187anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
117 122first strand
Strand 2
B
96 100anti-parallel
Strand 3
B
214 219anti-parallel
Strand 4
B
141 149anti-parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
133 134first strand
Strand 2
B
194 203anti-parallel
Strand 3
B
153 159anti-parallel
Strand 4
B
165 172anti-parallel
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There are 8 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
114 117first strand
Strand 2
C
95 97anti-parallel
Strand 3
C
208 213anti-parallel
Strand 4
C
138 146anti-parallel
Strand 5
C
173 175anti-parallel
Strand 6
C
138 146anti-parallel
Strand 7
C
180 181anti-parallel
Strand 8
C
138 146anti-parallel
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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
130 131first strand
Strand 2
C
188 197anti-parallel
Strand 3
C
150 156anti-parallel
Strand 4
C
160 164anti-parallel
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There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
113 118first strand
Strand 2
D
94 98anti-parallel
Strand 3
D
213 218anti-parallel
Strand 4
D
137 145anti-parallel
Strand 5
D
177 179anti-parallel
Strand 6
D
137 145anti-parallel
Strand 7
D
184 185anti-parallel
Strand 8
D
137 145anti-parallel
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There are 7 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
129 130first strand
Strand 2
D
192 197anti-parallel
Strand 3
D
149 156anti-parallel
Strand 4
D
161 162anti-parallel
Strand 5
D
149 156anti-parallel
Strand 6
D
168 169anti-parallel
Strand 7
D
149 156anti-parallel
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There are 8 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
117 122first strand
Strand 2
E
96 100anti-parallel
Strand 3
E
214 219anti-parallel
Strand 4
E
141 149anti-parallel
Strand 5
E
179 181anti-parallel
Strand 6
E
141 149anti-parallel
Strand 7
E
186 187anti-parallel
Strand 8
E
141 149anti-parallel
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There are 4 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
133 134first strand
Strand 2
E
194 203anti-parallel
Strand 3
E
153 159anti-parallel
Strand 4
E
165 172anti-parallel
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There are 8 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
114 117first strand
Strand 2
F
95 97anti-parallel
Strand 3
F
208 213anti-parallel
Strand 4
F
138 146anti-parallel
Strand 5
F
173 175anti-parallel
Strand 6
F
138 146anti-parallel
Strand 7
F
180 181anti-parallel
Strand 8
F
138 146anti-parallel
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There are 4 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
130 131first strand
Strand 2
F
188 197anti-parallel
Strand 3
F
150 156anti-parallel
Strand 4
F
160 164anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il