Analysis of interatomic Contacts of Structural Units in PDB entry:
2X4X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2X4X entry

There are 12 chains in PDB entry 2X4X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASP 1080GLU 1205
B
SER 28VAL 35
B
LYS 37TYR 41
C
ASP 1080GLY 1204
D
SER 28VAL 35
D
LYS 37HIS 39
E
ASP 1080GLU 1205
F
SER 28VAL 35
F
LYS 37PRO 38
G
PRO 1082GLN 1203
H
SER 28VAL 35
H
LYS 37HIS 39
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2X4X. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
1124 1139Right-handed alpha
Helix 2
2
A
1168 1177Right-handed alpha
Helix 3
3
A
1181 1203Right-handed alpha
Helix 4
4
C
1124 1139Right-handed alpha
Helix 5
5
C
1168 1177Right-handed alpha
Helix 6
6
C
1181 1204Right-handed alpha
Helix 7
7
E
1124 1139Right-handed alpha
Helix 8
8
E
1158 1160Right-handed 310
Helix 9
9
E
1168 1177Right-handed alpha
Helix 10
10
E
1181 1204Right-handed alpha
Helix 11
11
G
1124 1139Right-handed alpha
Helix 12
12
G
1168 1177Right-handed alpha
Helix 13
13
G
1181 1203Right-handed alpha
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There are 8 sheets in PDB entry 2X4X. Click on sheet of interest to get list of strands forming it: AA, AB, CA, CB, EA, EB, GA, GB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1154 1158first strand
Strand 2
A
1142 1147anti-parallel
Strand 3
A
1099 1104anti-parallel
Strand 4
A
1088 1091anti-parallel
Strand 5
A
1162 1164anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1113 1115first strand
Strand 2
A
1118 1120anti-parallel
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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
1154 1158first strand
Strand 2
C
1142 1147anti-parallel
Strand 3
C
1099 1104anti-parallel
Strand 4
C
1088 1091anti-parallel
Strand 5
C
1162 1164anti-parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
1113 1115first strand
Strand 2
C
1118 1120anti-parallel
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There are 5 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
1154 1157first strand
Strand 2
E
1143 1147anti-parallel
Strand 3
E
1099 1104anti-parallel
Strand 4
E
1088 1091anti-parallel
Strand 5
E
1162 1164anti-parallel
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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
1113 1115first strand
Strand 2
E
1118 1120anti-parallel
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There are 5 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
1154 1158first strand
Strand 2
G
1142 1147anti-parallel
Strand 3
G
1099 1104anti-parallel
Strand 4
G
1088 1091anti-parallel
Strand 5
G
1162 1164anti-parallel
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There are 2 strands in GB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
1114 1115first strand
Strand 2
G
1118 1119anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il