Analysis of interatomic Contacts of Structural Units in PDB entry:
2XOA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2XOA entry

There is 1 chain in PDB entry 2XOA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 12GLY 532
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2XOA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
62 65Right-handed 310
Helix 2
2
A
74 83Right-handed alpha
Helix 3
3
A
250 255Right-handed 310
Helix 4
4
A
255 258Right-handed 310
Helix 5
5
A
303 307Right-handed 310
Helix 6
6
A
308 313Right-handed alpha
Helix 7
7
A
394 421Right-handed alpha
Helix 8
8
A
437 452Right-handed alpha
Helix 9
9
A
466 481Right-handed alpha
Helix 10
10
A
482 495Right-handed alpha
Helix 11
11
A
510 513Right-handed 310
Helix 12
12
A
514 531Right-handed alpha
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There are 6 sheets in PDB entry 2XOA. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 27first strand
Strand 2
A
200 206anti-parallel
Strand 3
A
168 173anti-parallel
Strand 4
A
147 152anti-parallel
Strand 5
A
106 111anti-parallel
Strand 6
A
67 73anti-parallel
Strand 7
A
19 27anti-parallel
Strand 8
A
117 120first strand
Strand 9
A
133 138anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 194anti-parallel
Strand 2
A
179 183anti-parallel
Strand 3
A
280 284first strand
Strand 4
A
260 264anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 223anti-parallel
Strand 2
A
389 392anti-parallel
Strand 3
A
230 233first strand
Strand 4
A
245 248anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 379anti-parallel
Strand 2
A
356 359anti-parallel
Strand 3
A
290 294first strand
Strand 4
A
298 302anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 317first strand
Strand 2
A
347 350anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1

0 0first strand
Strand 2

0 0first strand
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il