Analysis of interatomic Contacts of Structural Units in PDB entry:
2Y05


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Y05 entry

There are 4 chains in PDB entry 2Y05 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2ALA 329
B
 SER 2ALA 329
C
 SER 2ALA 329
D
 SER 2ALA 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 2Y05. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 20Right-handed 310
Helix 2
2
A
48 54Right-handed alpha
Helix 3
3
A
55 57Right-handed 310
Helix 4
4
A
114 120Right-handed 310
Helix 5
5
A
123 135Right-handed alpha
Helix 6
6
A
152 165Right-handed alpha
Helix 7
7
A
175 186Right-handed alpha
Helix 8
8
A
198 207Right-handed alpha
Helix 9
9
A
219 228Right-handed alpha
Helix 10
10
A
241 246Right-handed alpha
Helix 11
11
A
256 263Right-handed alpha
Helix 12
12
A
271 275Right-handed 310
Helix 13
13
A
276 293Right-handed alpha
Helix 14
14
A
308 318Right-handed alpha
Helix 15
15
B
18 20Right-handed 310
Helix 16
16
B
48 54Right-handed alpha
Helix 17
17
B
55 57Right-handed 310
Helix 18
18
B
114 120Right-handed 310
Helix 19
19
B
123 135Right-handed alpha
Helix 20
20
B
152 165Right-handed alpha
Helix 21
21
B
175 186Right-handed alpha
Helix 22
22
B
198 207Right-handed alpha
Helix 23
23
B
219 228Right-handed alpha
Helix 24
24
B
241 245Right-handed 310
Helix 25
25
B
256 263Right-handed alpha
Helix 26
26
B
271 275Right-handed 310
Helix 27
27
B
276 293Right-handed alpha
Helix 28
28
B
308 318Right-handed alpha
Helix 29
29
C
18 20Right-handed 310
Helix 30
30
C
48 54Right-handed alpha
Helix 31
31
C
55 57Right-handed 310
Helix 32
32
C
114 120Right-handed 310
Helix 33
33
C
123 135Right-handed alpha
Helix 34
34
C
152 165Right-handed alpha
Helix 35
35
C
175 186Right-handed alpha
Helix 36
36
C
198 207Right-handed alpha
Helix 37
37
C
219 228Right-handed alpha
Helix 38
38
C
241 245Right-handed 310
Helix 39
39
C
256 263Right-handed alpha
Helix 40
40
C
271 275Right-handed 310
Helix 41
41
C
276 293Right-handed alpha
Helix 42
42
C
308 318Right-handed alpha
Helix 43
43
D
18 20Right-handed 310
Helix 44
44
D
48 54Right-handed alpha
Helix 45
45
D
55 57Right-handed 310
Helix 46
46
D
114 120Right-handed 310
Helix 47
47
D
123 135Right-handed alpha
Helix 48
48
D
152 165Right-handed alpha
Helix 49
49
D
175 186Right-handed alpha
Helix 50
50
D
198 207Right-handed alpha
Helix 51
51
D
219 228Right-handed alpha
Helix 52
52
D
241 245Right-handed 310
Helix 53
53
D
256 263Right-handed alpha
Helix 54
54
D
271 275Right-handed 310
Helix 55
55
D
276 293Right-handed alpha
Helix 56
56
D
308 318Right-handed alpha
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There are 20 sheets in PDB entry 2Y05. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE, CA, CB, CC, CD, CE, A, DB, C, DD, DE,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 9first strand
Strand 2
A
22 28anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 97first strand
Strand 2
A
37 45anti-parallel
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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 104first strand
Strand 2
A
84 87anti-parallel
Strand 3
A
67 74anti-parallel
Strand 4
A
37 45anti-parallel
Strand 5
A
324 328anti-parallel
Strand 6
A
300 304parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 104first strand
Strand 2
A
84 87anti-parallel
Strand 3
A
67 74anti-parallel
Strand 4
A
37 45anti-parallel
Strand 5
A
94 97anti-parallel
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There are 6 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 192first strand
Strand 2
A
168 173parallel
Strand 3
A
144 147parallel
Strand 4
A
211 216parallel
Strand 5
A
230 238parallel
Strand 6
A
266 269parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 9first strand
Strand 2
B
22 28anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 97first strand
Strand 2
B
37 45anti-parallel
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There are 6 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 104first strand
Strand 2
B
84 87anti-parallel
Strand 3
B
67 74anti-parallel
Strand 4
B
37 45anti-parallel
Strand 5
B
324 328anti-parallel
Strand 6
B
300 304parallel
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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 104first strand
Strand 2
B
84 87anti-parallel
Strand 3
B
67 74anti-parallel
Strand 4
B
37 45anti-parallel
Strand 5
B
94 97anti-parallel
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There are 6 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
189 192first strand
Strand 2
B
168 173parallel
Strand 3
B
144 147parallel
Strand 4
B
211 216parallel
Strand 5
B
230 238parallel
Strand 6
B
266 269parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 9first strand
Strand 2
C
22 28anti-parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
94 97first strand
Strand 2
C
37 45anti-parallel
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There are 6 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
103 104first strand
Strand 2
C
84 87anti-parallel
Strand 3
C
67 74anti-parallel
Strand 4
C
37 45anti-parallel
Strand 5
C
324 328anti-parallel
Strand 6
C
300 304parallel
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There are 5 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
103 104first strand
Strand 2
C
84 87anti-parallel
Strand 3
C
67 74anti-parallel
Strand 4
C
37 45anti-parallel
Strand 5
C
94 97anti-parallel
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There are 6 strands in CE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
189 192first strand
Strand 2
C
168 173parallel
Strand 3
C
144 147parallel
Strand 4
C
211 216parallel
Strand 5
C
230 238parallel
Strand 6
C
266 269parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 9first strand
Strand 2
D
22 28anti-parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
94 97first strand
Strand 2
D
37 45anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
103 104first strand
Strand 2
D
84 87anti-parallel
Strand 3
D
67 74anti-parallel
Strand 4
D
37 45anti-parallel
Strand 5
D
324 328anti-parallel
Strand 6
D
300 304parallel
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There are 5 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
103 104first strand
Strand 2
D
84 87anti-parallel
Strand 3
D
67 74anti-parallel
Strand 4
D
37 45anti-parallel
Strand 5
D
94 97anti-parallel
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There are 6 strands in DE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
189 192first strand
Strand 2
D
168 173parallel
Strand 3
D
144 147parallel
Strand 4
D
211 216parallel
Strand 5
D
230 238parallel
Strand 6
D
266 269parallel
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