Analysis of interatomic Contacts of Structural Units in PDB entry:
2Y08


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Y08 entry

There are 2 chains in PDB entry 2Y08 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 3ALA 500
B
 MET 1ALA 500
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 2Y08. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 18Right-handed alpha
Helix 2
2
A
37 52Right-handed alpha
Helix 3
3
A
101 114Right-handed alpha
Helix 4
4
A
126 131Right-handed alpha
Helix 5
5
A
132 134Right-handed 310
Helix 6
6
A
139 144Right-handed alpha
Helix 7
7
A
145 148Right-handed 310
Helix 8
8
A
177 184Right-handed alpha
Helix 9
9
A
210 214Right-handed 310
Helix 10
10
A
232 234Right-handed 310
Helix 11
11
A
235 253Right-handed alpha
Helix 12
12
A
258 261Right-handed 310
Helix 13
13
A
272 274Right-handed 310
Helix 14
14
A
289 303Right-handed alpha
Helix 15
15
A
318 322Right-handed alpha
Helix 16
16
A
324 329Right-handed alpha
Helix 17
17
A
349 362Right-handed alpha
Helix 18
18
A
378 384Right-handed 310
Helix 19
19
A
408 410Right-handed 310
Helix 20
20
A
411 427Right-handed alpha
Helix 21
21
A
428 431Right-handed 310
Helix 22
22
A
449 454Right-handed 310
Helix 23
23
A
463 470Right-handed alpha
Helix 24
24
A
472 484Right-handed alpha
Helix 25
25
B
13 18Right-handed alpha
Helix 26
26
B
37 52Right-handed alpha
Helix 27
27
B
101 114Right-handed alpha
Helix 28
28
B
126 131Right-handed alpha
Helix 29
29
B
132 134Right-handed 310
Helix 30
30
B
139 144Right-handed alpha
Helix 31
31
B
145 148Right-handed 310
Helix 32
32
B
177 184Right-handed alpha
Helix 33
33
B
210 214Right-handed 310
Helix 34
34
B
235 253Right-handed alpha
Helix 35
35
B
258 261Right-handed 310
Helix 36
36
B
272 274Right-handed 310
Helix 37
37
B
289 303Right-handed alpha
Helix 38
38
B
318 323Right-handed alpha
Helix 39
39
B
324 329Right-handed alpha
Helix 40
40
B
349 362Right-handed alpha
Helix 41
41
B
378 384Right-handed 310
Helix 42
42
B
408 410Right-handed 310
Helix 43
43
B
411 427Right-handed alpha
Helix 44
44
B
428 431Right-handed 310
Helix 45
45
B
449 454Right-handed 310
Helix 46
46
B
463 470Right-handed alpha
Helix 47
47
B
471 484Right-handed alpha
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There are 6 sheets in PDB entry 2Y08. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 34first strand
Strand 2
A
75 78parallel
Strand 3
A
55 58parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 88first strand
Strand 2
A
93 97anti-parallel
Strand 3
A
194 200anti-parallel
Strand 4
A
150 158anti-parallel
Strand 5
A
164 170anti-parallel
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There are 7 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 317first strand
Strand 2
A
221 230anti-parallel
Strand 3
A
276 284anti-parallel
Strand 4
A
263 270anti-parallel
Strand 5
A
371 376anti-parallel
Strand 6
A
398 406anti-parallel
Strand 7
A
336 344anti-parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 34first strand
Strand 2
B
75 78parallel
Strand 3
B
55 58parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 88first strand
Strand 2
B
93 97anti-parallel
Strand 3
B
194 200anti-parallel
Strand 4
B
150 158anti-parallel
Strand 5
B
164 170anti-parallel
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There are 7 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
310 317first strand
Strand 2
B
221 230anti-parallel
Strand 3
B
276 284anti-parallel
Strand 4
B
263 270anti-parallel
Strand 5
B
371 376anti-parallel
Strand 6
B
398 406anti-parallel
Strand 7
B
336 344anti-parallel
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