Analysis of interatomic Contacts of Structural Units in PDB entry:
2Y33


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Y33 entry

There are 2 chains in PDB entry 2Y33 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LEU 188ALA 301
A
TYR 303TYR 403
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 2Y33. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
189 197Right-handed alpha
Helix 2
2
A
197 205Right-handed alpha
Helix 3
3
A
215 232Right-handed alpha
Helix 4
4
A
266 282Right-handed alpha
Helix 5
5
A
335 340Right-handed alpha
Helix 6
6
A
393 403Right-handed alpha
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There are 4 sheets in PDB entry 2Y33. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
207 211first strand
Strand 2
A
362 367anti-parallel
Strand 3
A
322 329anti-parallel
Strand 4
A
383 392anti-parallel
Strand 5
A
298 303anti-parallel
Strand 6
A
255 259anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
207 211first strand
Strand 2
A
362 367anti-parallel
Strand 3
A
322 329anti-parallel
Strand 4
A
383 392anti-parallel
Strand 5
A
292 295parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
240 242first strand
Strand 2
A
251 252anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
310 313first strand
Strand 2
A
374 376anti-parallel
Strand 3
A
343 345anti-parallel
Strand 4
A
354 356anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il