Analysis of interatomic Contacts of Structural Units in PDB entry:
2YD5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YD5 entry

There is 1 chain in PDB entry 2YD5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASP 30ARG 228
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 2YD5. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
84 86Right-handed 310
Helix 2
2
A
97 102Right-handed alpha
Helix 3
3
A
126 130Right-handed 310
Helix 4
4
A
176 180Right-handed 310
Helix 5
5
A
198 202Right-handed 310
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There are 7 sheets in PDB entry 2YD5. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
31 37first strand
Strand 2
A
50 59anti-parallel
Strand 3
A
88 93anti-parallel
Strand 4
A
78 83anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
42 45first strand
Strand 2
A
114 125parallel
Strand 3
A
103 111anti-parallel
Strand 4
A
63 68anti-parallel
Strand 5
A
71 72anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
136 139first strand
Strand 2
A
157 159anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
144 147first strand
Strand 2
A
221 226parallel
Strand 3
A
203 210anti-parallel
Strand 4
A
215 217parallel
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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
144 147first strand
Strand 2
A
221 226parallel
Strand 3
A
203 210anti-parallel
Strand 4
A
165 170anti-parallel
Strand 5
A
173 174anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
215 217first strand
Strand 2
A
203 210parallel
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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
152 154first strand
Strand 2
A
192 194anti-parallel
Strand 3
A
184 186anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il