Analysis of interatomic Contacts of Structural Units in PDB entry:
2YD7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YD7 entry

There are 2 chains in PDB entry 2YD7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 21ARG 220
B
 GLU 21ARG 220
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 5 helices in PDB entry 2YD7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
117 121Right-handed 310
Helix 2
2
A
192 196Right-handed 310
Helix 3
3
B
75 77Right-handed 310
Helix 4
4
B
117 121Right-handed 310
Helix 5
5
B
192 196Right-handed 310
Back to top of page

There are 15 sheets in PDB entry 2YD7. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, AE, AF, AG, AH, AI, BB, BC, BD, BE, BF,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 28first strand
Strand 2
A
41 50anti-parallel
Strand 3
A
79 84anti-parallel
Strand 4
A
69 73anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 36first strand
Strand 2
A
105 116parallel
Back to list of sheets
Back to top of page

There are 8 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 63first strand
Strand 2
A
54 59parallel
Strand 3
A
94 102anti-parallel
Strand 4
A
105 116anti-parallel
Strand 5
B
106 116anti-parallel
Strand 6
B
94 101anti-parallel
Strand 7
B
54 59anti-parallel
Strand 8
B
62 63anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 63first strand
Strand 2
A
54 59parallel
Strand 3
A
94 102anti-parallel
Strand 4
A
105 116anti-parallel
Strand 5
A
33 36parallel
Back to list of sheets
Back to top of page

There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 36first strand
Strand 2
B
106 116anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 63first strand
Strand 2
A
54 59parallel
Strand 3
A
94 102anti-parallel
Strand 4
A
105 116anti-parallel
Strand 5
B
106 116anti-parallel
Strand 6
B
33 36anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 130first strand
Strand 2
A
143 150anti-parallel
Strand 3
A
183 188anti-parallel
Strand 4
A
175 180anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 138first strand
Strand 2
A
215 220parallel
Strand 3
A
197 205anti-parallel
Strand 4
A
208 211parallel
Back to list of sheets
Back to top of page

There are 5 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 138first strand
Strand 2
A
215 220parallel
Strand 3
A
197 205anti-parallel
Strand 4
A
156 161anti-parallel
Strand 5
A
164 165anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 211first strand
Strand 2
A
197 205parallel
Back to list of sheets
Back to top of page

There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 28first strand
Strand 2
B
41 50anti-parallel
Strand 3
B
79 84anti-parallel
Strand 4
B
69 74anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 130first strand
Strand 2
B
143 150anti-parallel
Strand 3
B
183 188anti-parallel
Strand 4
B
175 180anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 138first strand
Strand 2
B
215 220parallel
Strand 3
B
197 205anti-parallel
Strand 4
B
208 211parallel
Back to list of sheets
Back to top of page

There are 5 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 138first strand
Strand 2
B
215 220parallel
Strand 3
B
197 205anti-parallel
Strand 4
B
156 161anti-parallel
Strand 5
B
164 165anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 211first strand
Strand 2
B
197 205parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il