Analysis of interatomic Contacts of Structural Units in PDB entry:
2YIN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YIN entry

There are 4 chains in PDB entry 2YIN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 1196ARG 1620
B
LYS 1197ARG 1620
C
GLN -2LEU 177
D
PHE -3LEU 177
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 2YIN. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
1196 1215Right-handed alpha
Helix 2
2
A
1216 1234Right-handed alpha
Helix 3
3
A
1236 1249Right-handed alpha
Helix 4
4
A
1272 1292Right-handed alpha
Helix 5
5
A
1293 1311Right-handed alpha
Helix 6
6
A
1314 1335Right-handed alpha
Helix 7
7
A
1370 1382Right-handed alpha
Helix 8
8
A
1395 1401Right-handed alpha
Helix 9
9
A
1418 1422Right-handed 310
Helix 10
10
A
1427 1437Right-handed alpha
Helix 11
11
A
1457 1461Right-handed alpha
Helix 12
12
A
1493 1519Right-handed alpha
Helix 13
13
A
1524 1536Right-handed alpha
Helix 14
14
A
1543 1551Right-handed alpha
Helix 15
15
A
1552 1559Right-handed alpha
Helix 16
16
A
1562 1590Right-handed alpha
Helix 17
17
A
1592 1594Right-handed 310
Helix 18
18
A
1595 1618Right-handed alpha
Helix 19
19
B
1197 1214Right-handed alpha
Helix 20
20
B
1216 1235Right-handed alpha
Helix 21
21
B
1236 1249Right-handed alpha
Helix 22
22
B
1272 1292Right-handed alpha
Helix 23
23
B
1293 1311Right-handed alpha
Helix 24
24
B
1314 1335Right-handed alpha
Helix 25
25
B
1370 1382Right-handed alpha
Helix 26
26
B
1395 1400Right-handed alpha
Helix 27
27
B
1427 1436Right-handed alpha
Helix 28
28
B
1457 1460Right-handed 310
Helix 29
29
B
1493 1519Right-handed alpha
Helix 30
30
B
1524 1536Right-handed alpha
Helix 31
31
B
1543 1551Right-handed alpha
Helix 32
32
B
1552 1559Right-handed alpha
Helix 33
33
B
1562 1590Right-handed alpha
Helix 34
34
B
1592 1594Right-handed 310
Helix 35
35
B
1595 1617Right-handed alpha
Helix 36
36
C
11 15Right-handed 310
Helix 37
37
C
16 25Right-handed alpha
Helix 38
38
C
62 66Right-handed 310
Helix 39
39
C
67 72Right-handed 310
Helix 40
40
C
86 96Right-handed alpha
Helix 41
41
C
96 105Right-handed alpha
Helix 42
42
C
122 132Right-handed alpha
Helix 43
43
C
138 150Right-handed alpha
Helix 44
44
C
164 175Right-handed alpha
Helix 45
45
D
11 14Right-handed 310
Helix 46
46
D
15 25Right-handed alpha
Helix 47
47
D
61 66Right-handed 310
Helix 48
48
D
67 72Right-handed 310
Helix 49
49
D
86 96Right-handed alpha
Helix 50
50
D
96 105Right-handed alpha
Helix 51
51
D
118 121Right-handed 310
Helix 52
52
D
122 132Right-handed alpha
Helix 53
53
D
138 150Right-handed alpha
Helix 54
54
D
164 177Right-handed alpha
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There are 4 sheets in PDB entry 2YIN. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1342 1348first strand
Strand 2
A
1405 1414anti-parallel
Strand 3
A
1439 1449anti-parallel
Strand 4
A
1462 1475anti-parallel
Strand 5
A
1481 1492anti-parallel
Strand 6
A
1359 1364anti-parallel
Strand 7
A
1342 1348first strand
Strand 8
B
1342 1347first strand
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1405 1413anti-parallel
Strand 2
B
1439 1449anti-parallel
Strand 3
B
1462 1475anti-parallel
Strand 4
B
1481 1492anti-parallel
Strand 5
B
1359 1364anti-parallel
Strand 6
B
1342 1347first strand
Strand 7
C
40 46first strand
Strand 8
C
49 57anti-parallel
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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
2 9parallel
Strand 2
C
77 83parallel
Strand 3
C
110 115parallel
Strand 4
C
153 156parallel
Strand 5
D
40 46first strand
Strand 6
D
49 57anti-parallel
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There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
2 9parallel
Strand 2
D
77 83parallel
Strand 3
D
110 115parallel
Strand 4
D
153 156parallel
Strand 5
B
0 0first strand
Strand 6
B
0 0first strand
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il