Analysis of interatomic Contacts of Structural Units in PDB entry:
2YPT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YPT entry

There are 4 chains in PDB entry 2YPT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2MET 472
B
 LEU 10MET 472
D
 LEU 10THR 471
E
 LEU 10LEU 93
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 2YPT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 48Right-handed alpha
Helix 2
2
A
60 96Right-handed alpha
Helix 3
3
A
96 105Right-handed alpha
Helix 4
4
A
116 153Right-handed alpha
Helix 5
5
A
159 192Right-handed alpha
Helix 6
6
A
195 219Right-handed alpha
Helix 7
7
A
219 224Right-handed alpha
Helix 8
8
A
232 245Right-handed alpha
Helix 9
9
A
257 260Right-handed 310
Helix 10
10
A
281 285Right-handed alpha
Helix 11
11
A
325 342Right-handed alpha
Helix 12
12
A
343 367Right-handed alpha
Helix 13
13
A
370 376Right-handed alpha
Helix 14
14
A
383 394Right-handed alpha
Helix 15
15
A
396 425Right-handed alpha
Helix 16
16
A
427 442Right-handed alpha
Helix 17
17
A
449 456Right-handed alpha
Helix 18
18
A
461 472Right-handed alpha
Helix 19
19
B
15 48Right-handed alpha
Helix 20
20
B
60 96Right-handed alpha
Helix 21
21
B
96 105Right-handed alpha
Helix 22
22
B
116 153Right-handed alpha
Helix 23
23
B
159 192Right-handed alpha
Helix 24
24
B
195 216Right-handed alpha
Helix 25
25
B
219 223Right-handed 310
Helix 26
26
B
232 245Right-handed alpha
Helix 27
27
B
257 260Right-handed 310
Helix 28
28
B
281 285Right-handed alpha
Helix 29
29
B
325 342Right-handed alpha
Helix 30
30
B
343 367Right-handed alpha
Helix 31
31
B
370 376Right-handed alpha
Helix 32
32
B
383 394Right-handed alpha
Helix 33
33
B
396 425Right-handed alpha
Helix 34
34
B
427 442Right-handed alpha
Helix 35
35
B
449 456Right-handed alpha
Helix 36
36
B
461 472Right-handed alpha
Helix 37
37
D
15 48Right-handed alpha
Helix 38
38
D
60 96Right-handed alpha
Helix 39
39
D
96 105Right-handed alpha
Helix 40
40
D
116 153Right-handed alpha
Helix 41
41
D
159 192Right-handed alpha
Helix 42
42
D
195 216Right-handed alpha
Helix 43
43
D
219 223Right-handed 310
Helix 44
44
D
232 245Right-handed alpha
Helix 45
45
D
257 260Right-handed 310
Helix 46
46
D
281 285Right-handed alpha
Helix 47
47
D
325 342Right-handed alpha
Helix 48
48
D
343 367Right-handed alpha
Helix 49
49
D
370 376Right-handed alpha
Helix 50
50
D
383 394Right-handed alpha
Helix 51
51
D
396 425Right-handed alpha
Helix 52
52
D
427 442Right-handed alpha
Helix 53
53
D
449 456Right-handed alpha
Helix 54
54
D
461 471Right-handed alpha
Helix 55
55
E
15 48Right-handed alpha
Helix 56
56
E
60 96Right-handed alpha
Helix 57
57
E
96 105Right-handed alpha
Helix 58
58
E
116 153Right-handed alpha
Helix 59
59
E
159 192Right-handed alpha
Helix 60
60
E
195 219Right-handed alpha
Helix 61
61
E
220 223Right-handed 310
Helix 62
62
E
232 245Right-handed alpha
Helix 63
63
E
257 260Right-handed 310
Helix 64
64
E
281 285Right-handed alpha
Helix 65
65
E
325 342Right-handed alpha
Helix 66
66
E
343 367Right-handed alpha
Helix 67
67
E
370 376Right-handed alpha
Helix 68
68
E
383 394Right-handed alpha
Helix 69
69
E
396 425Right-handed alpha
Helix 70
70
E
427 442Right-handed alpha
Helix 71
71
E
449 456Right-handed alpha
Helix 72
72
E
461 471Right-handed alpha
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There are 4 sheets in PDB entry 2YPT. Click on sheet of interest to get list of strands forming it: AA, BA, A, EA,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 228first strand
Strand 2
A
252 255anti-parallel
Strand 3
A
276 280parallel
Strand 4
A
266 269anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
226 228first strand
Strand 2
B
252 255anti-parallel
Strand 3
B
276 280parallel
Strand 4
B
266 269anti-parallel
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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
226 228first strand
Strand 2
D
252 255anti-parallel
Strand 3
D
276 280parallel
Strand 4
D
266 269anti-parallel
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There are 4 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
226 228first strand
Strand 2
E
252 255anti-parallel
Strand 3
E
276 280parallel
Strand 4
E
266 269anti-parallel
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