Analysis of interatomic Contacts of Structural Units in PDB entry:
2YT4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YT4 entry

There is 1 chain in PDB entry 2YT4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 489GLU 701
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 2YT4. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
511 523Right-handed alpha
Helix 2
2
A
560 577Right-handed alpha
Helix 3
3
A
593 601Right-handed 310
Helix 4
4
A
607 616Right-handed alpha
Helix 5
5
A
619 630Right-handed alpha
Helix 6
6
A
668 685Right-handed alpha
Helix 7
7
A
690 699Right-handed alpha
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There are 3 sheets in PDB entry 2YT4. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
492 495first strand
Strand 2
A
502 505anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
529 534first strand
Strand 2
A
542 548anti-parallel
Strand 3
A
551 558anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
637 640first strand
Strand 2
A
651 657anti-parallel
Strand 3
A
660 666anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il