Analysis of interatomic Contacts of Structural Units in PDB entry:
2YYO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2YYO entry

There is 1 chain in PDB entry 2YYO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 6LEU 165
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There is 1 helix in PDB entry 2YYO. Click on helix number for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
113 117Right-handed 310
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There are 2 sheets in PDB entry 2YYO. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
7 9first strand
Strand 2
A
28 31anti-parallel
Strand 3
A
145 150anti-parallel
Strand 4
A
57 61anti-parallel
Strand 5
A
78 81anti-parallel
Strand 6
A
87 88anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
11 14first strand
Strand 2
A
17 20anti-parallel
Strand 3
A
155 160anti-parallel
Strand 4
A
42 50anti-parallel
Strand 5
A
106 111anti-parallel
Strand 6
A
121 127anti-parallel
Strand 7
A
130 137anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il