Analysis of interatomic Contacts of Structural Units in PDB entry:
2ZME


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2ZME entry

There are 4 chains in PDB entry 2ZME (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 34ALA 250
B
 LYS 172SER 386
C
 SER 4ARG 102
D
 PHE 5TRP 101
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 2ZME. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 55Right-handed alpha
Helix 2
2
A
56 61Right-handed alpha
Helix 3
3
A
61 76Right-handed alpha
Helix 4
4
A
85 92Right-handed alpha
Helix 5
5
A
93 116Right-handed alpha
Helix 6
6
A
121 132Right-handed alpha
Helix 7
7
A
140 152Right-handed alpha
Helix 8
8
A
153 155Right-handed 310
Helix 9
9
A
177 188Right-handed alpha
Helix 10
10
A
195 203Right-handed alpha
Helix 11
11
A
205 219Right-handed alpha
Helix 12
12
B
175 201Right-handed alpha
Helix 13
13
B
212 224Right-handed alpha
Helix 14
14
B
232 236Right-handed 310
Helix 15
15
B
239 259Right-handed alpha
Helix 16
16
B
266 277Right-handed alpha
Helix 17
17
B
283 293Right-handed alpha
Helix 18
18
B
294 298Right-handed 310
Helix 19
19
B
319 335Right-handed alpha
Helix 20
20
B
338 347Right-handed alpha
Helix 21
21
B
349 363Right-handed alpha
Helix 22
22
B
381 384Right-handed 310
Helix 23
23
C
8 18Right-handed 310
Helix 24
24
C
22 44Right-handed alpha
Helix 25
25
C
51 57Right-handed alpha
Helix 26
26
C
70 84Right-handed alpha
Helix 27
27
D
13 18Right-handed 310
Helix 28
28
D
22 44Right-handed alpha
Helix 29
29
D
52 57Right-handed alpha
Helix 30
30
D
62 66Right-handed 310
Helix 31
31
D
70 83Right-handed alpha
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There are 7 sheets in PDB entry 2ZME. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 120first strand
Strand 2
A
166 170anti-parallel
Strand 3
A
159 163anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 194first strand
Strand 2
A
233 235anti-parallel
Strand 3
A
223 225anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
263 265first strand
Strand 2
B
311 315anti-parallel
Strand 3
B
301 305anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
366 371first strand
Strand 2
B
374 379anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
48 50first strand
Strand 2
C
96 99anti-parallel
Strand 3
C
87 89anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
61 62first strand
Strand 2
C
67 68anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
48 49first strand
Strand 2
D
97 99anti-parallel
Strand 3
D
87 89anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il