Analysis of interatomic Contacts of Structural Units in PDB entry:
3A5W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3A5W entry

There are 10 chains in PDB entry 3A5W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 2	ALA 245
B	PRO 2	ALA 245
C	PRO 2	ALA 245
D	PRO 2	ALA 245
E	PRO 2	ALA 245
F	PRO 2	ALA 245
G	PRO 2	ALA 245
H	PRO 2	GLU 244
I	PRO 2	ALA 245
J	PRO 2	GLU 244

There are 86 helices in PDB entry 3A5W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	27	32	Right-handed alpha
Helix 2	2	A	47	60	Right-handed alpha
Helix 3	3	A	60	67	Right-handed alpha
Helix 4	4	A	78	93	Right-handed alpha
Helix 5	5	A	107	113	Right-handed alpha
Helix 6	6	A	150	168	Right-handed alpha
Helix 7	7	A	192	203	Right-handed alpha
Helix 8	8	A	219	235	Right-handed alpha
Helix 9	9	A	240	245	Right-handed 310
Helix 10	10	B	27	32	Right-handed alpha
Helix 11	11	B	47	60	Right-handed alpha
Helix 12	12	B	60	67	Right-handed alpha
Helix 13	13	B	78	93	Right-handed alpha
Helix 14	14	B	107	113	Right-handed alpha
Helix 15	15	B	150	168	Right-handed alpha
Helix 16	16	B	192	203	Right-handed alpha
Helix 17	17	B	219	235	Right-handed alpha
Helix 18	18	B	240	245	Right-handed 310
Helix 19	19	C	27	32	Right-handed alpha
Helix 20	20	C	47	60	Right-handed alpha
Helix 21	21	C	60	67	Right-handed alpha
Helix 22	22	C	78	94	Right-handed alpha
Helix 23	23	C	107	114	Right-handed alpha
Helix 24	24	C	150	168	Right-handed alpha
Helix 25	25	C	192	203	Right-handed alpha
Helix 26	26	C	219	235	Right-handed alpha
Helix 27	27	C	240	245	Right-handed 310
Helix 28	28	D	27	32	Right-handed alpha
Helix 29	29	D	47	60	Right-handed alpha
Helix 30	30	D	60	67	Right-handed alpha
Helix 31	31	D	78	94	Right-handed alpha
Helix 32	32	D	107	113	Right-handed alpha
Helix 33	33	D	150	168	Right-handed alpha
Helix 34	34	D	192	201	Right-handed alpha
Helix 35	35	D	219	235	Right-handed alpha
Helix 36	36	D	240	245	Right-handed 310
Helix 37	37	E	27	32	Right-handed alpha
Helix 38	38	E	47	60	Right-handed alpha
Helix 39	39	E	60	68	Right-handed alpha
Helix 40	40	E	78	93	Right-handed alpha
Helix 41	41	E	107	113	Right-handed alpha
Helix 42	42	E	150	168	Right-handed alpha
Helix 43	43	E	192	203	Right-handed alpha
Helix 44	44	E	219	235	Right-handed alpha
Helix 45	45	E	240	245	Right-handed 310
Helix 46	46	F	27	32	Right-handed alpha
Helix 47	47	F	47	60	Right-handed alpha
Helix 48	48	F	60	67	Right-handed alpha
Helix 49	49	F	78	93	Right-handed alpha
Helix 50	50	F	107	113	Right-handed alpha
Helix 51	51	F	150	168	Right-handed alpha
Helix 52	52	F	192	203	Right-handed alpha
Helix 53	53	F	219	235	Right-handed alpha
Helix 54	54	G	27	32	Right-handed alpha
Helix 55	55	G	47	60	Right-handed alpha
Helix 56	56	G	60	67	Right-handed alpha
Helix 57	57	G	78	93	Right-handed alpha
Helix 58	58	G	107	113	Right-handed alpha
Helix 59	59	G	150	167	Right-handed alpha
Helix 60	60	G	192	201	Right-handed alpha
Helix 61	61	G	219	235	Right-handed alpha
Helix 62	62	H	27	32	Right-handed alpha
Helix 63	63	H	47	60	Right-handed alpha
Helix 64	64	H	60	67	Right-handed alpha
Helix 65	65	H	78	93	Right-handed alpha
Helix 66	66	H	107	113	Right-handed alpha
Helix 67	67	H	150	167	Right-handed alpha
Helix 68	68	H	192	201	Right-handed alpha
Helix 69	69	H	219	235	Right-handed alpha
Helix 70	70	I	27	32	Right-handed alpha
Helix 71	71	I	47	60	Right-handed alpha
Helix 72	72	I	60	67	Right-handed alpha
Helix 73	73	I	78	93	Right-handed alpha
Helix 74	74	I	107	113	Right-handed alpha
Helix 75	75	I	150	168	Right-handed alpha
Helix 76	76	I	192	202	Right-handed alpha
Helix 77	77	I	219	235	Right-handed alpha
Helix 78	78	I	240	245	Right-handed alpha
Helix 79	79	J	27	32	Right-handed alpha
Helix 80	80	J	47	60	Right-handed alpha
Helix 81	81	J	60	67	Right-handed alpha
Helix 82	82	J	78	93	Right-handed alpha
Helix 83	83	J	107	113	Right-handed alpha
Helix 84	84	J	150	168	Right-handed alpha
Helix 85	85	J	192	203	Right-handed alpha
Helix 86	86	J	219	235	Right-handed alpha

There are 30 sheets in PDB entry 3A5W. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	5	first strand
Strand 2	B	3	5	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	19	first strand
Strand 2	A	22	26	anti-parallel

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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	103	first strand
Strand 2	A	69	75	parallel
Strand 3	A	36	40	parallel
Strand 4	A	126	131	anti-parallel
Strand 5	A	137	143	anti-parallel
Strand 6	B	137	143	anti-parallel
Strand 7	B	126	131	anti-parallel
Strand 8	B	36	40	anti-parallel
Strand 9	B	69	75	parallel
Strand 10	B	101	103	parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	186	first strand
Strand 2	A	212	215	anti-parallel
Strand 3	A	206	209	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	19	first strand
Strand 2	B	22	26	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	186	first strand
Strand 2	B	212	215	anti-parallel
Strand 3	B	206	209	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	5	first strand
Strand 2	D	3	5	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	19	first strand
Strand 2	C	22	26	anti-parallel

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There are 10 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	103	first strand
Strand 2	C	69	75	parallel
Strand 3	C	36	41	parallel
Strand 4	C	126	131	anti-parallel
Strand 5	C	137	143	anti-parallel
Strand 6	D	137	143	anti-parallel
Strand 7	D	126	131	anti-parallel
Strand 8	D	36	41	anti-parallel
Strand 9	D	69	75	parallel
Strand 10	D	101	103	parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	185	186	first strand
Strand 2	C	212	215	anti-parallel
Strand 3	C	206	209	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	19	first strand
Strand 2	D	22	26	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	185	186	first strand
Strand 2	D	212	215	anti-parallel
Strand 3	D	206	209	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	5	first strand
Strand 2	F	3	5	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	15	19	first strand
Strand 2	E	22	26	anti-parallel

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There are 10 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	101	103	first strand
Strand 2	E	69	75	parallel
Strand 3	E	36	40	parallel
Strand 4	E	126	131	anti-parallel
Strand 5	E	137	143	anti-parallel
Strand 6	F	137	143	anti-parallel
Strand 7	F	126	131	anti-parallel
Strand 8	F	36	40	anti-parallel
Strand 9	F	69	75	parallel
Strand 10	F	101	103	parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	185	186	first strand
Strand 2	E	212	215	anti-parallel
Strand 3	E	206	209	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	15	19	first strand
Strand 2	F	22	26	anti-parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	185	186	first strand
Strand 2	F	212	215	anti-parallel
Strand 3	F	206	209	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	5	first strand
Strand 2	H	3	5	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	15	19	first strand
Strand 2	G	22	26	anti-parallel

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There are 10 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	101	103	first strand
Strand 2	G	69	75	parallel
Strand 3	G	36	41	parallel
Strand 4	G	126	131	anti-parallel
Strand 5	G	137	143	anti-parallel
Strand 6	H	137	143	anti-parallel
Strand 7	H	126	131	anti-parallel
Strand 8	H	36	41	anti-parallel
Strand 9	H	69	75	parallel
Strand 10	H	101	103	parallel

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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	185	186	first strand
Strand 2	G	212	215	anti-parallel
Strand 3	G	206	209	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	15	19	first strand
Strand 2	H	22	26	anti-parallel

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There are 3 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	185	186	first strand
Strand 2	H	212	215	anti-parallel
Strand 3	H	206	209	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	4	first strand
Strand 2	J	4	5	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	15	19	first strand
Strand 2	I	22	26	anti-parallel

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There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	101	103	first strand
Strand 2	I	69	75	parallel
Strand 3	I	36	41	parallel
Strand 4	I	126	131	anti-parallel
Strand 5	I	137	143	anti-parallel
Strand 6	J	137	143	anti-parallel
Strand 7	J	126	131	anti-parallel
Strand 8	J	36	41	anti-parallel
Strand 9	J	69	75	parallel
Strand 10	J	101	103	parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	185	186	first strand
Strand 2	I	212	215	anti-parallel
Strand 3	I	206	209	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	15	19	first strand
Strand 2	J	22	26	anti-parallel

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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	185	186	first strand
Strand 2	J	212	215	anti-parallel
Strand 3	J	206	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3A5W

Analysis of interatomic Contacts of Structural Units in PDB entry:
3A5W