Analysis of interatomic Contacts of Structural Units in PDB entry:
3A8N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3A8N entry

There is 1 chain in PDB entry 3A8N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
THR 433THR 670
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 3A8N. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
531 554Right-handed alpha
Helix 2
2
A
558 581Right-handed alpha
Helix 3
3
A
581 589Right-handed alpha
Helix 4
4
A
593 597Right-handed 310
Helix 5
5
A
599 625Right-handed alpha
Helix 6
6
A
635 642Right-handed alpha
Helix 7
7
A
644 651Right-handed alpha
Helix 8
8
A
660 665Right-handed alpha
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There are 2 sheets in PDB entry 3A8N. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
453 455first strand
Strand 2
A
437 449anti-parallel
Strand 3
A
463 470anti-parallel
Strand 4
A
473 474anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
453 455first strand
Strand 2
A
437 449anti-parallel
Strand 3
A
523 526anti-parallel
Strand 4
A
517 519anti-parallel
Strand 5
A
501 502anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il